Literature DB >> 8612075

In vitro evolution of thermodynamically stable turns.

H X Zhou1, R H Hoess, W F DeGrado.   

Abstract

To determine the role of primary structure in specifying turns, random sequences (guests) were substituted for the native turn sequences in a series of proteins (hosts) of differing thermodynamic stabilities.The fraction of inserts that result in active proteins is measured as a function of the stability of the host and temperature. With a highly stable host, more than half of the inserts give functional proteins. However, a smaller fraction of sequences supports folding as the stability of the host decreases, and the temperature increases. The sequences of many of the selected inserts resemble the wild-type turn, and those that diverge match other established turn preferences. Thermodynamic measurements show that turn sequences selected under stringent conditions result in the most stable proteins. Thus, beta-turns appear to be under evolutionary pressure favouring thermodynamically stable structures.

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Year:  1996        PMID: 8612075     DOI: 10.1038/nsb0596-446

Source DB:  PubMed          Journal:  Nat Struct Biol        ISSN: 1072-8368


  21 in total

1.  A "loop entropy reduction" phage-display selection for folded amino acid sequences.

Authors:  P Minard; M Scalley-Kim; A Watters; D Baker
Journal:  Protein Sci       Date:  2001-01       Impact factor: 6.725

2.  Distinguishing between sequential and nonsequentially folded proteins: implications for folding and misfolding.

Authors:  C J Tsai; J V Maizel; R Nussinov
Journal:  Protein Sci       Date:  1999-08       Impact factor: 6.725

3.  Patterned library analysis: a method for the quantitative assessment of hypotheses concerning the determinants of protein structure.

Authors:  S J Lahr; A Broadwater; C W Carter; M L Collier; L Hensley; J C Waldner; G J Pielak; M H Edgell
Journal:  Proc Natl Acad Sci U S A       Date:  1999-12-21       Impact factor: 11.205

4.  Evolution of binding affinity in a WW domain probed by phage display.

Authors:  P A Dalby; R H Hoess; W F DeGrado
Journal:  Protein Sci       Date:  2000-12       Impact factor: 6.725

5.  Turn scanning by site-directed mutagenesis: application to the protein folding problem using the intestinal fatty acid binding protein.

Authors:  K Kim; C Frieden
Journal:  Protein Sci       Date:  1998-08       Impact factor: 6.725

Review 6.  De novo design of helical bundles as models for understanding protein folding and function.

Authors:  R B Hill; D P Raleigh; A Lombardi; W F DeGrado
Journal:  Acc Chem Res       Date:  2000-11       Impact factor: 22.384

7.  Using flexible loop mimetics to extend phi-value analysis to secondary structure interactions.

Authors:  N Ferguson; J R Pires; F Toepert; C M Johnson; Y P Pan; R Volkmer-Engert; J Schneider-Mergener; V Daggett; H Oschkinat; A Fersht
Journal:  Proc Natl Acad Sci U S A       Date:  2001-10-30       Impact factor: 11.205

8.  Increasing protein stability using a rational approach combining sequence homology and structural alignment: Stabilizing the WW domain.

Authors:  X Jiang; J Kowalski; J W Kelly
Journal:  Protein Sci       Date:  2001-07       Impact factor: 6.725

9.  Experimental evolution of a green fluorescent protein composed of 19 unique amino acids without tryptophan.

Authors:  Akio Kawahara-Kobayashi; Mitsuhiro Hitotsuyanagi; Kazuaki Amikura; Daisuke Kiga
Journal:  Orig Life Evol Biosph       Date:  2014-11-16       Impact factor: 1.950

10.  Increasing protein conformational stability by optimizing beta-turn sequence.

Authors:  Saul R Trevino; Stephanie Schaefer; J Martin Scholtz; C Nick Pace
Journal:  J Mol Biol       Date:  2007-08-09       Impact factor: 5.469

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