Literature DB >> 15112109

Characterization of 298 ESTs from porcine back fat tissue and their assignment to the SSRH radiation hybrid map.

Ayumi Mikawa1, Hideaki Suzuki, Kohei Suzuki, Daisuke Toki, Hirohide Uenishi, Takashi Awata, Noriyuki Hamasima.   

Abstract

Following several criteria, we collected, clustered, and functionally categorized 653 expressed sequence tags (ESTs) of 5' ends from porcine back fat libraries from the >15,000 porcine ESTs collected to date. By searching the LocusLink and Mapviewer database, we knew the positions of these 653 ESTs on human chromosomes (HSAs). Sus scrofa radiation hybrid (SSRH) mapping revealed that 298 porcine EST clusters out of 653 were localized near microsatellite (MS) markers. Among these EST clusters, we could assign 182 to their porcine chromosomes (SSCs) on the SSRH map.

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Year:  2004        PMID： 15112109     DOI： 10.1007/s00335-003-2323-7

Source DB:  PubMed          Journal:  Mamm Genome        ISSN： 0938-8990            Impact factor:   2.957


  26 in total

1.  Application of differential display RT-PCR to identify porcine liver ESTs.

Authors:  S Ponsuksili; K Wimmers; K Schellander
Journal:  Gene       Date:  2001-12-12       Impact factor: 3.688

2.  Repbase update: a database and an electronic journal of repetitive elements.

Authors:  J Jurka
Journal:  Trends Genet       Date:  2000-09       Impact factor: 11.639

3.  A first-generation EST RH comparative map of the porcine and human genome.

Authors:  Anette Rink; Elizabeth M Santschi; Katie M Eyer; Benjamin Roelofs; Markus Hess; Myra Godfrey; Elif K Karajusuf; Martine Yerle; Denis Milan; Craig W Beattie
Journal:  Mamm Genome       Date:  2002-10       Impact factor: 2.957

4.  A comparative map of the porcine and human genomes demonstrates ZOO-FISH and gene mapping-based chromosomal homologies.

Authors:  L Frönicke; B P Chowdhary; H Scherthan; I Gustavsson
Journal:  Mamm Genome       Date:  1996-04       Impact factor: 2.957

5.  Genome maps 7. The human transcript map. Wall chart.

Authors:  G D Schuler; M S Boguski; T J Hudson; L Hui; J Ma; A B Castle; X Wu; J Silva; H C Nusbaum; B B Birren; D K Slonim; S Rozen; L D Stein; D Page; E S Lander; E A Stewart; A Aggarwal; E Bajorek; S Brady; S Chu; N Fang; D Hadley; M Harris; S Hussain; J R Hudson
Journal:  Science       Date:  1996-10-25       Impact factor: 47.728

Review 6.  The origin of interspersed repeats in the human genome.

Authors:  A F Smit
Journal:  Curr Opin Genet Dev       Date:  1996-12       Impact factor: 5.578

7.  A first-generation porcine whole-genome radiation hybrid map.

Authors:  R J Hawken; J Murtaugh; G H Flickinger; M Yerle; A Robic; D Milan; J Gellin; C W Beattie; L B Schook; L J Alexander
Journal:  Mamm Genome       Date:  1999-08       Impact factor: 2.957

8.  d2_cluster: a validated method for clustering EST and full-length cDNAsequences.

Authors:  J Burke; D Davison; W Hide
Journal:  Genome Res       Date:  1999-11       Impact factor: 9.043

9.  Localization of 113 anchor loci in pigs: improvement of the comparative map for humans, pigs, and goats.

Authors:  P Pinton; L Schibler; E Cribiu; J Gellin; M Yerle
Journal:  Mamm Genome       Date:  2000-04       Impact factor: 2.957

10.  Construction of a whole-genome radiation hybrid panel for high-resolution gene mapping in pigs.

Authors:  M Yerle; P Pinton; A Robic; A Alfonso; Y Palvadeau; C Delcros; R Hawken; L Alexander; C Beattie; L Schook; D Milan; J Gellin
Journal:  Cytogenet Cell Genet       Date:  1998
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  4 in total

1.  A new 4016-marker radiation hybrid map for porcine-human genome analysis.

Authors:  Noriyuki Hamasima; Ayumi Mikawa; Hideaki Suzuki; Kohei Suzuki; Hirohide Uenishi; Takashi Awata
Journal:  Mamm Genome       Date:  2008-01-11       Impact factor: 2.957

2.  Generation and analysis of large-scale expressed sequence tags (ESTs) from a full-length enriched cDNA library of porcine backfat tissue.

Authors:  Tae-Hun Kim; Nam-Soon Kim; Dajeong Lim; Kyung-Tai Lee; Jung-Hwa Oh; Hye-Sook Park; Gil-Won Jang; Hyung-Yong Kim; Mina Jeon; Bong-Hwan Choi; Hae-Young Lee; H Y Chung; Heebal Kim
Journal:  BMC Genomics       Date:  2006-02-27       Impact factor: 3.969

3.  A pig multi-tissue normalised cDNA library: large-scale sequencing, cluster analysis and 9K micro-array resource generation.

Authors:  Agnès Bonnet; Eddie Iannuccelli; Karine Hugot; Francis Benne; Maria F Bonaldo; Marcelo B Soares; François Hatey; Gwenola Tosser-Klopp
Journal:  BMC Genomics       Date:  2008-01-14       Impact factor: 3.969

4.  A high utility integrated map of the pig genome.

Authors:  Sean J Humphray; Carol E Scott; Richard Clark; Brandy Marron; Clare Bender; Nick Camm; Jayne Davis; Andrew Jenks; Angela Noon; Manish Patel; Harminder Sehra; Fengtang Yang; Margarita B Rogatcheva; Denis Milan; Patrick Chardon; Gary Rohrer; Dan Nonneman; Pieter de Jong; Stacey N Meyers; Alan Archibald; Jonathan E Beever; Lawrence B Schook; Jane Rogers
Journal:  Genome Biol       Date:  2007       Impact factor: 13.583
  4 in total

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