Literature DB >> 15111400

Water alignment, dipolar interactions, and multiple proton occupancy during water-wire proton transport.

Tom Chou1.   

Abstract

A discrete multistate kinetic model for water-wire proton transport is constructed and analyzed using Monte Carlo simulations. In the model, each water molecule can be in one of three states: oxygen lone-pairs pointing leftward, pointing rightward, or protonated (H(3)O(+)). Specific rules for transitions among these states are defined as protons hop across successive water oxygens. Our model also includes water-channel interactions that preferentially align the water dipoles, nearest-neighbor dipolar coupling interactions, and Coulombic repulsion. Extensive Monte Carlo simulations were performed and the observed qualitative physical behaviors discussed. We find the parameters that allow the model to exhibit superlinear and sublinear current-voltage relationships, and show why alignment fields, whether generated by interactions with the pore interior or by membrane potentials, always decrease the proton current. The simulations also reveal a "lubrication" mechanism that suppresses water dipole interactions when the channel is multiply occupied by protons. This effect can account for an observed sublinear-to-superlinear transition in the current-voltage relationship.

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Year:  2004        PMID: 15111400      PMCID: PMC1304152          DOI: 10.1016/S0006-3495(04)74335-0

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  38 in total

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3.  Energetic optimization of ion conduction rate by the K+ selectivity filter.

Authors:  J H Morais-Cabral; Y Zhou; R MacKinnon
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5.  Continuum electrostatics fails to describe ion permeation in the gramicidin channel.

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6.  The role of Trp side chains in tuning single proton conduction through gramicidin channels.

Authors:  Joseph A Gowen; Jeffrey C Markham; Sara E Morrison; Timothy A Cross; David D Busath; Eric J Mapes; Mark F Schumaker
Journal:  Biophys J       Date:  2002-08       Impact factor: 4.033

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Journal:  J Bioenerg Biomembr       Date:  1987-10       Impact factor: 2.945

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Journal:  Ann N Y Acad Sci       Date:  1980       Impact factor: 5.691

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Journal:  J Membr Biol       Date:  1983       Impact factor: 1.843

10.  Potassium channels as multi-ion single-file pores.

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Journal:  J Gen Physiol       Date:  1978-10       Impact factor: 4.086

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  6 in total

1.  Folding of gas-phase polyalanines in a static electric field: alignment, deformations, and polarization effects.

Authors:  F Calvo; P Dugourd
Journal:  Biophys J       Date:  2008-01-25       Impact factor: 4.033

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3.  One-dimensional deterministic transport in neurons measured by dispersion-relation phase spectroscopy.

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4.  Microscopic properties of nanopore water from its time-dependent dielectric response.

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Journal:  Phys Rev B Condens Matter Mater Phys       Date:  2010-11-10

5.  Single-file water in nanopores.

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Journal:  Phys Chem Chem Phys       Date:  2011-07-21       Impact factor: 3.676

6.  Origin of the Shape of Current-Voltage Curve through Nanopores: A Molecular Dynamics Study.

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Journal:  Sci Rep       Date:  2016-05-11       Impact factor: 4.379

  6 in total

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