Literature DB >> 15107231

Avida: a software platform for research in computational evolutionary biology.

Charles Ofria1, Claus O Wilke.   

Abstract

Avida is a software platform for experiments with self-replicating and evolving computer programs. It provides detailed control over experimental settings and protocols, a large array of measurement tools, and sophisticated methods to analyze and post-process experimental data. We explain the general principles on which Avida is built, as well as its main components and their interactions. We also explain how experiments are set up, carried out, and analyzed.

Mesh：

Year:  2004        PMID： 15107231     DOI： 10.1162/106454604773563612

Source DB:  PubMed          Journal:  Artif Life        ISSN： 1064-5462            Impact factor:   0.667


  46 in total

1.  Evolution of resistance to quorum quenching in digital organisms.

Authors:  Benjamin E Beckmann; David B Knoester; Brian D Connelly; Christopher M Waters; Philip K McKinley
Journal:  Artif Life       Date:  2012-06-04       Impact factor: 0.667

2.  Evolution of music by public choice.

Authors:  Robert M MacCallum; Matthias Mauch; Austin Burt; Armand M Leroi
Journal:  Proc Natl Acad Sci U S A       Date:  2012-06-18       Impact factor: 11.205

3.  Selective pressures for accurate altruism targeting: evidence from digital evolution for difficult-to-test aspects of inclusive fitness theory.

Authors:  Jeff Clune; Heather J Goldsby; Charles Ofria; Robert T Pennock
Journal:  Proc Biol Sci       Date:  2010-09-15       Impact factor: 5.349

4.  Sexual reproduction reshapes the genetic architecture of digital organisms.

Authors:  Dusan Misevic; Charles Ofria; Richard E Lenski
Journal:  Proc Biol Sci       Date:  2006-02-22       Impact factor: 5.349

5.  Organism size promotes the evolution of specialized cells in multicellular digital organisms.

Authors:  M Willensdorfer
Journal:  J Evol Biol       Date:  2007-11-23       Impact factor: 2.411

6.  The ecology of action selection: insights from artificial life.

Authors:  Anil K Seth
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2007-09-29       Impact factor: 6.237

7.  Experiments on the role of deleterious mutations as stepping stones in adaptive evolution.

Authors:  Arthur W Covert; Richard E Lenski; Claus O Wilke; Charles Ofria
Journal:  Proc Natl Acad Sci U S A       Date:  2013-08-05       Impact factor: 11.205

Review 8.  Using artificial systems to explore the ecology and evolution of symbioses.

Authors:  Babak Momeni; Chi-Chun Chen; Kristina L Hillesland; Adam Waite; Wenying Shou
Journal:  Cell Mol Life Sci       Date:  2011-03-23       Impact factor: 9.261

9.  Stochasticity versus determinism: consequences for realistic gene regulatory network modelling and evolution.

Authors:  Dafyd J Jenkins; Dov J Stekel
Journal:  J Mol Evol       Date:  2010-02-12       Impact factor: 2.395

Review 10.  Systems-biology approaches for predicting genomic evolution.

Authors:  Balázs Papp; Richard A Notebaart; Csaba Pál
Journal:  Nat Rev Genet       Date:  2011-08-02       Impact factor: 53.242
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