Literature DB >> 15089097

Assessment and modeling of the toxicity of organic chemicals to Chlorella vulgaris: development of a novel database.

Mark T D Cronin1, Tatiana I Netzeva, John C Dearden, Robert Edwards, Andrew D P Worgan.   

Abstract

This study reports a database of toxicity values for 91 compounds assessed in a novel, rapid, and economical 15 min algal toxicity test. The toxicity data were measured using the unicellular green alga Chlorella vulgaris in an assay that determined the disappearance of fluorescein diacetate. The chemicals tested covered a wide range of physicochemical properties and mechanisms of action. Quantitative activity-activity relationships with the toxicity of the chemicals to other species (Tetrahymena pyriformis, Vibrio fischeri, and Pimephales promelas) showed strong relationships, although some differences resulting from different protocols were established. Quantitative structure-activity relationships (QSARs) were determined using linear [multiple linear regression (MLR)] and nonlinear [k-nearest neighbors (KNN)] methods. Three descriptors, accounting for hydrophobicity, electrophilicity, and a function of molecular size corrected for the presence of heteroatoms, were found to be important to model toxicity. The predictivity of MLR was compared to KNN using leave-one-out cross-validation and the simulation of an external test set. MLR demonstrated greater stability in validation. The results of this study showed that method selection in QSAR is task-dependent and it is inappropriate to resort to more complicated but less transparent methods, unless there are clear indications (e.g., inability of MLR to deal with the data set) for the need of such methods.

Entities:  

Mesh:

Substances:

Year:  2004        PMID: 15089097     DOI: 10.1021/tx0342518

Source DB:  PubMed          Journal:  Chem Res Toxicol        ISSN: 0893-228X            Impact factor:   3.739


  5 in total

1.  Comparative performance of descriptors in a multiple linear and Kriging models: a case study on the acute toxicity of organic chemicals to algae.

Authors:  Gulcin Tugcu; H Birkan Yilmaz; Melek Türker Saçan
Journal:  Environ Sci Pollut Res Int       Date:  2014-06-21       Impact factor: 4.223

2.  Comparing Acute Effects of a Nano-TiO2 Pigment on Cosmopolitan Freshwater Phototrophic Microbes Using High-Throughput Screening.

Authors:  Chu Thi Thanh Binh; Christopher G Peterson; Tiezheng Tong; Kimberly A Gray; Jean-François Gaillard; John J Kelly
Journal:  PLoS One       Date:  2015-04-29       Impact factor: 3.240

3.  Low potency toxins reveal dense interaction networks in metabolism.

Authors:  William Bains
Journal:  BMC Syst Biol       Date:  2016-02-20

4.  Prediction of the aquatic toxicity of aromatic compounds to tetrahymena pyriformis through support vector regression.

Authors:  Qiang Su; Wencong Lu; Dongshu Du; Fuxue Chen; Bing Niu; Kuo-Chen Chou
Journal:  Oncotarget       Date:  2017-07-25

5.  Köln-Timişoara Molecular activity combined models toward interspecies toxicity assessment.

Authors:  Sergiu A Chicu; Mihai V Putz
Journal:  Int J Mol Sci       Date:  2009-11-20       Impact factor: 6.208

  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.