| Literature DB >> 20057956 |
Sergiu A Chicu1, Mihai V Putz2.
Abstract
Aiming to provide a unified picture of computed activity - quantitative structure activity relationships, the so called Köln (ESIP-ElementSpecificInfluenceParameter) model for activity and Timisoara (Spectral-SAR) formulation of QSAR were pooled in order to assess the toxicity modeling and inter-toxicity correlation maps for aquatic organisms against paradigmatic organic compounds. The Köln ESIP model for estimation of a compound toxicity is based on the experimental measurement expressing the direct action of chemicals on the organism Hydractinia echinata so that the structural influence parameters are reflected by the metamorphosis degree itself. As such, the calculation of the structural parameters is absolutely necessary for correct evaluation and interpretation of the evolution of M(easured) and the C(computed) values. On the other hand, the Timişoara Spectral-SAR analysis offers correlation models and paths for H.e. species as well as for four other different organisms with which the toxicity may be inter-changed by means of the same mechanism of action induced by certain common chemicals.Entities:
Keywords: ElementSpecificInfluenceParameter-ESIP; Hansch parameters; Hydractinia echinata; Spectral-SAR; algebraic correlation; least action principle
Mesh:
Substances:
Year: 2009 PMID: 20057956 PMCID: PMC2790119 DOI: 10.3390/ijms10104474
Source DB: PubMed Journal: Int J Mol Sci ISSN: 1422-0067 Impact factor: 6.208
The vectorial (molecular) descriptors in a Spectral-SAR analysis represented as states, within the Hilbert N-dimensional space of investigated molecules.
| | | | | | | | | | | ||
|---|---|---|---|---|---|---|
| 1 | ||||||
| 1 | ||||||
| 1 | ||||||
The measured Mlog(1/MRC50) and ESIP-computed Clog(1/MRC50) toxicities for Hydractinia echinata and other organisms: for compounds nos. 2–7 from Ref. [5], for compounds nos. 13–21 from Ref. [6], new data for the rest; the Hansch molecular parameters as hydrophobicity (LogP), polarizability (POL) and the steric optimized total energy (Etot) were computed by HyperChem environment [26].
| | | | | | | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | Water | −1.23 | −0.91 | −0.51 | 1.41 | −8038.2 | ||||||||
| 2 | Methanol | −0.22 | −0.41 | 0.33 | 0.15 | 0.04 | 0.24 | −0.27 | 3.25 | −11622.9 | ||||
| 3 | Ethanol | 0.02 | 0.09 | 0.59 | 0.60 | 0.51 | 0.74 | 0.11 | 1.11 | 0.93 | 0.25 | 0.08 | 5.08 | −15215.4 |
| 4 | 1-Butanol | 0.99 | 1.08 | 1.48 | 1.50 | 1.63 | 1.73 | 1.34 | 2.18 | 1.57 | 1.68 | 0.94 | 8.75 | −22402.8 |
| 5 | 1,2,3-Propanetriol | 0.34 | 0.37 | −1.08 | 8.19 | −33600. | ||||||||
| 6 | Triphenylmethanol | 5.69 | 5.27 | 4.87 | 32.23 | −68532.5 | ||||||||
| 7 | 1,10-Diaminodecane | 3.26 | 2.91 | 1.48 | 21.83 | −46754.2 | ||||||||
| 8 | 2-Benzylpyridine | 3.75 | 3.46 | 3.41 | 4.85 | 3.53 | 21.22 | −43675.3 | ||||||
| 9 | 4-Benzylpyridine | 4.08 | 3.46 | 3.68 | 4.85 | 3.75 | 21.22 | −43676.8 | ||||||
| 10 | 4-Phenylpyridin | 4.13 | 3.46 | 3.66 | 3.46 | 3.98 | 3.81 | 4.91 | 4.84 | 3.35 | 19.38 | −40083.1 | ||
| 11 | 4-Toluidine | 2.85 | 2.02 | 2.98 | 2.81 | 3.43 | 3.26 | 1.73 | 13.62 | −28300.3 | ||||
| 12 | 1,2-Dichlorobenzene | 3.04 | 3.45 | 4.00 | 3.66 | 4.19 | 4.17 | 3.08 | 14.29 | −36217.2 | ||||
| 13 | Phenol(3,15/2,66/2,85) | 2.89 | 2.87 | 2.79 | 2.58 | 3.41 | 3.21 | 3.42 | 3.68 | 3.32 | 3.32 | 1.76 | 11.07 | −27003.1 |
| 14 | 2-Methylphenol(3,18/3,24) | 3.21 | 2.82 | 2.72 | 2.58 | 3.77 | 3.21 | 3.75 | 3.68 | 3.64 | 3.32 | 2.23 | 12.91 | −30596.6 |
| 15 | 2,4,6-Trimethyphenol(3,19/4,00) | 3.60 | 3.82 | 3.42 | 3.48 | 4.02 | 4.21 | 4.08 | 4.75 | 4.49 | 4.75 | 3.16 | 16.58 | −37783.7 |
| 16 | 1,2-Dihydroxibenzene | 5.11 | 5.11 | 3.75 | 3.47 | 4.08 | 4.08 | 3.54 | 3.54 | 4.68 | 4.24 | 1.48 | 11.71 | −34396.4 |
| 17 | 2-Methoxyphenol(2,89/2,77) | 2.83 | 3.28 | 2.49 | 2.54 | 3.29 | 1.51 | 13.54 | −37974.4 | |||||
| 18 | 1,4-Dihydroxybenzene(6,14/6,06) | 6.10 | 6.10 | 3.47 | 3.59 | 6.40 | 6.40 | 6.42 | 6.42 | 1.48 | 11.71 | −34395.8 | ||
| 19 | t-Butylhydroquinone(5,05/5,00) | 5.30 | 7.60 | 4.94 | 7.78 | 8.03 | 3.11 | 19.05 | −48758.1 | |||||
| 20 | 1,2,3-Trihydroxibenzene | 5.15 | 5.15 | 3.85 | 3.65 | 1.19 | 12.35 | −41789.9 | ||||||
| 21 | 4(3',5'-dimethyl--3'-heptyl) phenol | 7.65 | 6.81 | 4.87 | 25.75 | −55742. | ||||||||
| 22 | 4-Chlorophenol | 3.25 | 3.04 | 3.55 | 3.56 | 4.18 | 3.66 | 4.19 | 3.88 | 4.13 | 3.95 | 2.28 | 13 | −35307.6 |
| 23 | 2,6-Diisopropylphenol | 3.73 | 5.31 | 4.82 | 5.21 | 6.36 | 6.90 | 4.15 | 22.08 | −48554.7 | ||||
| 24 | 2-Aminophenol | 3.15 | 3.04 | 3.94 | 2.93 | 0.98 | 12.42 | −32098.6 | ||||||
| 25 | 2,4,6-Trinitrophenol | 2.92 | 2.99 | 2.84 | 2.63 | 3.77 | −4.17 | 16.59 | −84472.1 | |||||
| 26 | Chloranil | 5.15 | − | 1.12 | 18.51 | −66928.2 | ||||||||
| 27 | Chloranilic acid | 3.40 | 2.99 | −0.48 | 15.93 | −65113.6 | ||||||||
| 28 | 4-Methoxyazobenzene | 5.20 | 3.70 | 4.10 | 24.63 | −59069.5 | ||||||||
The M* values represents the experimental results accomplished by different time interval with different generations of H.e. These results clearly prove the reproducibility of the test-system.
Mlog-Spectral Spectral-SAR results employing the molecular parameters and the Hydractinia echinata (H.e.), Tetrahymena pyriformis (T.p.), Pimephales promelas (P.p.), Vibrio fisheri (V.f.), and Daphnia magna (D.m.) toxicities of Table 2; the models are characterized either by algebraic norms and correlation factors (RA), computed upon the Equations (6) and (8), and by Pearson statistical correlation (R) of Equation (7), for all possible mono-, bi-, and all- end-points, respectively. The referential algebraic norms of the considered species were estimated with the aid of Equation (6) from the Mlog input toxicity data of Table 2 as: ║|YH.e.>║ = 20.8547, ║|YT.p.>║ = 13.2774, ║|YP.p.>║ = 12.8515, ║|YV.f.>║ = 12.1055, ║|YD.m.>║ = 9.31242.
| |1> | | | 19.0572 | 0.9138 | 0.5912 | |
| | | 12.642 | 0.9521 | 0.4446 | ||
| | | 12.1481 | 0.9453 | 0.6972 | ||
| | | 11.1235 | 0.9189 | 0.4396 | ||
| | | 9.09749 | 0.9769 | 0.8300 | ||
| |2> | | | 19.7048 | 0.9449 | 0.7597 | |
| | | 12.9074 | 0.9721 | 0.7267 | ||
| | | 12.2254 | 0.9513 | 0.7357 | ||
| | | 11.3472 | 0.9374 | 0.6092 | ||
| | | 9.16099 | 0.9837 | 0.8832 | ||
| |3> | | | 19.2139 | 0.9213 | 0.6355 | |
| | | 12.6819 | 0.9551 | 0.4969 | ||
| | | 12.5439 | 0.9761 | 0.8785 | ||
| | | 10.926 | 0.9026 | 0.1982 | ||
| | | 9.26686 | 0.9951 | 0.9662 | ||
| |1,2> | | | 19.7462 | 0.9468 | 0.7694 | |
| | | 12.9228 | 0.9733 | 0.7398 | ||
| | | 12.2271 | 0.9514 | 0.7365 | ||
| | | 11.5146 | 0.9512 | 0.7116 | ||
| |1,3> | | | 20.0182 | 0.9599 | 0.8307 | |
| | | 13.018 | 0.9805 | 0.8171 | ||
| | | 12.646 | 0.9840 | 0.9203 | ||
| | | 11.6329 | 0.9610 | 0.7767 | ||
| |2,3> | | | 19.7224 | 0.9457 | 0.7638 | |
| | | 12.9078 | 0.9722 | 0.7270 | ||
| | | 12.6208 | 0.9820 | 0.9101 | ||
| | | 11.4347 | 0.9446 | 0.6645 | ||
| {|1,2,3>} | | | 20.1085 | 0.9642 | 0.8502 | |
| | | 13.0541 | 0.9832 | 0.8447 | ||
The same type of Spectral-SAR models as those of Table 3, here for Clog data of Table 2. The referential algebraic norms of the considered species were estimated with the Equation (6) from the Clog input toxicity data of Table 2 as: ║|YH.e.>║ = 20.1051, ║|YT.p.>║ = 14.8984, ║|YP.p.>║ = 15.5929, ║|YV.f.>║ = 16.6682, ║|YD.m.>║ = 11.3438.
| |1> | | | 18.1498 | 0.9027 | 0.5744 | |
| | | 14.6075 | 0.9805 | 0.8572 | ||
| | | 14.7182 | 0.9439 | 0.7011 | ||
| | | 15.6785 | 0.9406 | 0.4605 | ||
| | | 11.2079 | 0.9880 | 0.9432 | ||
| |2> | | | 18.5655 | 0.9234 | 0.6831 | |
| | | 14.7122 | 0.9875 | 0.9108 | ||
| | | 14.871 | 0.9537 | 0.7604 | ||
| | | 16.1385 | 0.9682 | 0.7565 | ||
| | | 11.2605 | 0.9927 | 0.9655 | ||
| |3> | | | 18.16 | 0.9033 | 0.5773 | |
| | | 14.8013 | 0.9935 | 0.9544 | ||
| | | 15.2359 | 0.9771 | 0.8882 | ||
| | | 15.6221 | 0.9372 | 0.4106 | ||
| | | 11.3184 | 0.9978 | 0.9896 | ||
| |1,2> | | | 18.6415 | 0.9272 | 0.7014 | |
| | | 14.7128 | 0.9875 | 0.9112 | ||
| | | 14.908 | 0.9561 | 0.7742 | ||
| | | 16.187 | 0.9711 | 0.7816 | ||
| |1,3> | | | 18.9449 | 0.9423 | 0.7708 | |
| | | 14.8152 | 0.9944 | 0.9611 | ||
| | | 15.4088 | 0.9882 | 0.9437 | ||
| | | 16.2777 | 0.9766 | 0.8267 | ||
| |2,3> | | | 18.5804 | 0.9242 | 0.6868 | |
| | | 14.8118 | 0.9942 | 0.9594 | ||
| | | 15.3717 | 0.9858 | 0.9320 | ||
| | | 16.1548 | 0.9692 | 0.7650 | ||
| {|1,2,3>} | | | 19.1684 | 0.9534 | 0.8188 | |
| | | 14.8153 | 0.9944 | 0.9611 | ||
Synopsis of the statistic and algebraic values of paths connecting the Spectral-SAR models for Hydractinia echinata (H.e.) and Tetrahymena pyriformis (T.p.) in the Mlog/Clog and algebraic/statistical computational frames of Tables 3 and 4. The primary, secondary and tertiary - the so called alpha (α), beta (β) and gamma (γ) - paths are indicated according to the least path principle in spectral norm-correlation space, respectively.
| Species | ||||||||
|---|---|---|---|---|---|---|---|---|
| |1>→|1,2>→|1,2,3> | 1.05246 | 1.01981 | 0.41325 | 0.208278 | 0.232353 | |||
| |1>→|1,3>→|1,3,2> | 1.08273 | 1.04754 | 0.574673 | |||||
| |1>→|2,3>→|1,2,3> | 1.05246 | 1.08284 | 1.01981 | 1.0476 | 0.41325 | 0.575534 | 0.208278 | 0.232342 |
| |2>→|1,2>→|2,1,3> | 0.404191 | 0.413755 | 0.603637 | 0.61798 | 0.147067 | 0.188257 | ||
| |2>→|1,3>→|2,1,3> | 0.404191 | 0.413756 | 0.603637 | 0.617987 | 0.147067 | 0.188265 | 0.103313 | 0.114674 |
| |2>→|2,3>→|2,3,1> | 0.103313 | 0.114674 | ||||||
| |3>→|1,2>→|3,1,2> | 0.920041 | 1.03703 | 0.510175 | 0.191347 | 0.212443 | |||
| |3>→|1,3>→|3,1,2> | 0.89559 | 1.00961 | 0.373261 | 0.0140336 | 0.0155182 | |||
| |3>→|2,3>→|3,2,1> | 0.89559 | 0.920044 | 1.00961 | 1.03703 | 0.373261 | 0.510232 | ||
The same type of information and analysis as in Table 5, here for Pimephales promelas (P.p.) and Vibrio fisheri (V.f.) species.
| Species | ||||||||
|---|---|---|---|---|---|---|---|---|
| |1>→|1,2> | 0.0792073 | 0.0881801 | 0.190201 | 0.2034 | ||||
| |1>→|1,3> | 0.511148 | 0.61083 | 0.600329 | 0.702271 | ||||
| |1>→|2,3> | 0.474093 | 0.518389 | 0.654817 | 0.69307 | 0.312213 | 0.383883 | 0.477152 | 0.565317 |
| |2>→|1,2> | 0.167993 | 0.196303 | 0.0485269 | 0.0545366 | ||||
| |2>→|1,3> | 0.421805 | 0.459267 | 0.538921 | 0.568184 | 0.28669 | 0.331225 | 0.139438 | 0.155864 |
| |2>→|2,3> | 0.396554 | 0.432134 | 0.501725 | 0.529282 | ||||
| |3>→|1,2> | 0.3177 | 0.347114 | 0.328541 | 0.347126 | 0.590616 | 0.781086 | 0.565916 | 0.675813 |
| |3>→|1,3> | 0.102435 | 0.11035 | 0.173271 | 0.181596 | ||||
| |3>→|2,3> | 0.510379 | 0.690032 | 0.53365 | 0.639803 | ||||
Figure 1.The Hydractinia echinata (H.e.), Tetrahymena pyriformis (T.p.), Pimephales promelas (P.p.), Vibrio fisheri (V.f.), and Daphnia magna (D.m.) interspecies Spectral-SAR map modeling the molecular mechanisms for Mlog-algebraic toxicity paths of Tables 5 and 6 connecting the algebraic correlations of Table 3 across the ordered models of Table 7; the difference between species is made by the assignments of distinct icons, while alpha, beta and gamma paths are differentiated by thickness decreasing of lines joining the same icons; the D.m. pseudo-path (interrupted line on map) is considered from the highest correlation model towards the lowest one in Table 3.
Figure 4.The same type of representation as of Figure 1, here at the Clog-statistic level.
Synopsis of the interspecies minimum paths and the associated ordered endpoints for each of the Mlog/Clog-algebraic/statistic modes of computations abstracted from the Tables 5 and 6.
| |2>→|1,2> | |3>→|2,3> | |1>→|1,3> | |2>→|3>→|1>→|1,2>→|2,3>→|1,3>→{|1,2,3>} | ||
| |3>→|2,3> | |2>→|1,2> | |1>→|1,3> | |3>→|2>→|1>→|2,3>→|1,2>→|1,3>→{|1,2,3>} | ||
| |2>→|1,2> | |3>→|2,3> | |1>→|1,3> | |2>→|3>→|1>→|1,2>→|2,3>→|1,3>→{|1,2,3>} | ||
| |3>→|2,3> | |2>→|1,2> | |1>→|1,3> | |3>→|2>→|1>→|2,3>→|1,2>→|1,3>→{|1,2,3>} | ||
Figure 3.The same type of representation as of Figure 1, here at the Mlog-statistic level.
Figure 2.The same type of representation as of Figure 1, here at the Clog-algebraic level.