Literature DB >> 24946708

Comparative performance of descriptors in a multiple linear and Kriging models: a case study on the acute toxicity of organic chemicals to algae.

Gulcin Tugcu1, H Birkan Yilmaz, Melek Türker Saçan.   

Abstract

This study presents quantitative structure-toxicity relationship (QSTR) models on the toxicity of 91 organic compounds to Chlorella vulgaris using multiple linear regression (MLR) and Kriging techniques. The molecular descriptors were calculated using SPARTAN and DRAGON programs, and descriptor selection was made by "all subset" method available in the QSARINS software. MLR and Kriging models developed with the same descriptors were compared. In addition to these models, Kriging method was used for descriptor selection, and model development. The selected descriptors showed the importance of hydrophobicity, molecular weight and atomic ionization state in describing the toxicity of a diverse set of chemicals to C. vulgaris. A QSTR model should be associated with appropriate measures of goodness-of-fit, robustness, and predictivity in order to be used for regulatory purpose. Therefore, while the internal performances (goodness-of-fit and robustness) of the models were determined by using a training set, the predictive abilities of the models were determined by using a test set. The results of the study showed that while MLR method is easier to apply, the Kriging method was more successful in predicting toxicity.

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Year:  2014        PMID: 24946708     DOI: 10.1007/s11356-014-3182-3

Source DB:  PubMed          Journal:  Environ Sci Pollut Res Int        ISSN: 0944-1344            Impact factor:   4.223


  28 in total

1.  Quantitative structure-activity relationship studies using Gaussian processes.

Authors:  F R Burden
Journal:  J Chem Inf Comput Sci       Date:  2001 May-Jun

2.  Effects of microcystin-LR on the metal bioaccumulation and toxicity in Chlamydomonas reinhardtii.

Authors:  Ning-Xin Wang; Xue-Ying Zhang; Jun Wu; Lin Xiao; Ying Yin; Ai-Jun Miao; Rong Ji; Liu-Yan Yang
Journal:  Water Res       Date:  2011-10-25       Impact factor: 11.236

3.  Structure/response correlations and similarity/diversity analysis by GETAWAY descriptors. 2. Application of the novel 3D molecular descriptors to QSAR/QSPR studies.

Authors:  Viviana Consonni; Roberto Todeschini; Manuela Pavan; Paola Gramatica
Journal:  J Chem Inf Comput Sci       Date:  2002 May-Jun

4.  Gaussian processes: a method for automatic QSAR modeling of ADME properties.

Authors:  Olga Obrezanova; Gabor Csanyi; Joelle M R Gola; Matthew D Segall
Journal:  J Chem Inf Model       Date:  2007-06-28       Impact factor: 4.956

5.  Prediction of the basicities of pyridines in the gas phase and in aqueous solution.

Authors:  Glenn I Hawe; Ibon Alkorta; Paul L A Popelier
Journal:  J Chem Inf Model       Date:  2010-01       Impact factor: 4.956

6.  Exploring an ecotoxicity database with the OECD (Q)SAR Toolbox and DRAGON descriptors in order to prioritise testing on algae, daphnids, and fish.

Authors:  Cleo Tebby; Enrico Mombelli; Pascal Pandard; Alexandre R R Péry
Journal:  Sci Total Environ       Date:  2011-08-15       Impact factor: 7.963

7.  Assessing the toxicity on [C3mim][Tf2N] to aquatic organisms of different trophic levels.

Authors:  Sónia P M Ventura; Ana M M Gonçalves; Fernando Gonçalves; João A P Coutinho
Journal:  Aquat Toxicol       Date:  2009-12-16       Impact factor: 4.964

8.  Effect of (C6H5)3PbCl and (C6H5)3SnCl on delayed luminescence intensity, evolving oxygen and electron transport rate in photosystem II of Chlorella vulgaris.

Authors:  Antoni Murkowski; Elzbieta Skórska
Journal:  Bull Environ Contam Toxicol       Date:  2009-09-27       Impact factor: 2.151

9.  Neurotoxic mechanisms of electrophilic type-2 alkenes: soft soft interactions described by quantum mechanical parameters.

Authors:  Richard M LoPachin; Terrence Gavin; Brian C Geohagen; Soma Das
Journal:  Toxicol Sci       Date:  2007-05-22       Impact factor: 4.849

10.  Mechanism-based quantitative structure-activity relationships on toxicity of selected herbicides to Chlorella vulgaris and Raphidocelis subcapitata.

Authors:  Guanghui Ding; Xue Li; Fan Zhang; Jingwen Chen; Liping Huang; Xianliang Qiao
Journal:  Bull Environ Contam Toxicol       Date:  2009-07-07       Impact factor: 2.151

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