Literature DB >> 15079053

Controlling the enantioselectivity of enzymes by directed evolution: practical and theoretical ramifications.

Manfred T Reetz1.   

Abstract

A fundamentally new approach to asymmetric catalysis in organic chemistry is described based on the in vitro evolution of enantioselective enzymes. It comprises the appropriate combination of gene mutagenesis and expression coupled with an efficient high-throughput screening system for evaluating enantioselectivity (enantiomeric excess assay). Several such cycles lead to a "Darwinistic" process, which is independent of any knowledge concerning the structure or the mechanism of the enzyme being evolved. The challenge is to choose the optimal mutagenesis methods to navigate efficiently in protein sequence space. As a first example, the combination of error-prone mutagenesis, saturation mutagenesis, and DNA-shuffling led to a dramatic enhancement of enantioselectivity of a lipase acting as a catalyst in the kinetic resolution of a chiral ester. Mutations at positions remote from the catalytically active center were identified, a surprising finding, which was explained on the basis of a novel relay mechanism. The scope and limitations of the method are discussed, including the prospect of directed evolution of stereoselective hybrid catalysts composed of robust protein hosts in which transition metal centers have been implanted.

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Year:  2004        PMID: 15079053      PMCID: PMC395973          DOI: 10.1073/pnas.0306866101

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  44 in total

Review 1.  The chemistry of the antibody molecule.

Authors:  Peter G Schultz; Jun Yin; Richard A Lerner
Journal:  Angew Chem Int Ed Engl       Date:  2002-12-02       Impact factor: 15.336

2.  Effects of remote mutation on the autolysis of HIV-1 PR: X-ray and NMR investigations.

Authors:  Mukesh Kumar; K K Kannan; M V Hosur; Neel S Bhavesh; Amarnath Chatterjee; Rohit Mittal; R V Hosur
Journal:  Biochem Biophys Res Commun       Date:  2002-06-07       Impact factor: 3.575

3.  Enhancing the enantioselectivity of an epoxide hydrolase by directed evolution.

Authors:  Manfred T Reetz; Claudia Torre; Andreas Eipper; Renate Lohmer; Marcus Hermes; Birgit Brunner; Andrea Maichele; Marco Bocola; Michael Arand; Annette Cronin; Yvonne Genzel; Alain Archelas; Roland Furstoss
Journal:  Org Lett       Date:  2004-01-22       Impact factor: 6.005

4.  Randomization of genes by PCR mutagenesis.

Authors:  R C Cadwell; G F Joyce
Journal:  PCR Methods Appl       Date:  1992-08

5.  Asymmetric catalysis: science and opportunities (Nobel lecture).

Authors:  Ryoji Noyori
Journal:  Angew Chem Int Ed Engl       Date:  2002-06-17       Impact factor: 15.336

6.  Directed evolution of an esterase from Pseudomonas fluorescens. Random mutagenesis by error-prone PCR or a mutator strain and identification of mutants showing enhanced enantioselectivity by a resorufin-based fluorescence assay.

Authors:  E Henke; U T Bornscheuer
Journal:  Biol Chem       Date:  1999 Jul-Aug       Impact factor: 3.915

7.  Crystal structure of pseudomonas aeruginosa lipase in the open conformation. The prototype for family I.1 of bacterial lipases.

Authors:  M Nardini; D A Lang; K Liebeton; K E Jaeger; B W Dijkstra
Journal:  J Biol Chem       Date:  2000-10-06       Impact factor: 5.157

Review 8.  Stereoselectivities of microbial epoxide hydrolases.

Authors:  R V Orru; K Faber
Journal:  Curr Opin Chem Biol       Date:  1999-02       Impact factor: 8.822

9.  Artificial metalloenzymes for enantioselective catalysis based on biotin-avidin.

Authors:  Jérôme Collot; Julieta Gradinaru; Nicolas Humbert; Myriem Skander; Andrea Zocchi; Thomas R Ward
Journal:  J Am Chem Soc       Date:  2003-07-30       Impact factor: 15.419

10.  Searching for new reactivity (Nobel lecture).

Authors:  K Barry Sharpless
Journal:  Angew Chem Int Ed Engl       Date:  2002-06-17       Impact factor: 15.336

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  29 in total

1.  Artificial metalloenzymes based on biotin-avidin technology for the enantioselective reduction of ketones by transfer hydrogenation.

Authors:  Christophe Letondor; Nicolas Humbert; Thomas R Ward
Journal:  Proc Natl Acad Sci U S A       Date:  2005-03-16       Impact factor: 11.205

Review 2.  Laboratory-directed protein evolution.

Authors:  Ling Yuan; Itzhak Kurek; James English; Robert Keenan
Journal:  Microbiol Mol Biol Rev       Date:  2005-09       Impact factor: 11.056

3.  Computationally mapping sequence space to understand evolutionary protein engineering.

Authors:  Kathryn A Armstrong; Bruce Tidor
Journal:  Biotechnol Prog       Date:  2007-11-17

4.  Control of stereoselectivity in an enzymatic reaction by backdoor access.

Authors:  Richard Wombacher; Sonja Keiper; Sandra Suhm; Alexander Serganov; Dinshaw J Patel; Andres Jäschke
Journal:  Angew Chem Int Ed Engl       Date:  2006-04-03       Impact factor: 15.336

5.  Highly L and D enantioselective variants of horseradish peroxidase discovered by an ultrahigh-throughput selection method.

Authors:  Eugene Antipov; Art E Cho; K Dane Wittrup; Alexander M Klibanov
Journal:  Proc Natl Acad Sci U S A       Date:  2008-11-12       Impact factor: 11.205

Review 6.  Rational and Semirational Protein Design.

Authors:  Ivan V Korendovych
Journal:  Methods Mol Biol       Date:  2018

7.  Characterization and evolution of a metagenome-derived lipase towards enhanced enzyme activity and thermostability.

Authors:  Rakesh Kumar; Monika Sharma; Ranvir Singh; Jagdeep Kaur
Journal:  Mol Cell Biochem       Date:  2012-10-27       Impact factor: 3.396

8.  Novel trans-Acting Bacillus subtilis glnA mutations that derepress glnRA expression.

Authors:  Susan H Fisher; Lewis V Wray
Journal:  J Bacteriol       Date:  2009-02-20       Impact factor: 3.490

Review 9.  Enzyme (re)design: lessons from natural evolution and computation.

Authors:  John A Gerlt; Patricia C Babbitt
Journal:  Curr Opin Chem Biol       Date:  2009-02-23       Impact factor: 8.822

Review 10.  Computer aided enzyme design and catalytic concepts.

Authors:  Maria P Frushicheva; Matthew J L Mills; Patrick Schopf; Manoj K Singh; Ram B Prasad; Arieh Warshel
Journal:  Curr Opin Chem Biol       Date:  2014-05-08       Impact factor: 8.822

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