Literature DB >> 15075269

A paradoxical mutant GATA factor.

M Isabel Muro-Pastor1, Joseph Strauss, Ana Ramón, Claudio Scazzocchio.   

Abstract

The niiA (nitrite reductase) and niaD (nitrate reductase) genes of Aspergillus nidulans are subject to both induction by nitrate and repression by ammonium or glutamine. The intergenic region between these genes functions as a bidirectional promoter. In this region, nucleosomes are positioned under nonexpression conditions. On nitrate induction under derepressing conditions, total loss of positioning occurs. This is independent of transcription and of the NirA-specific transcription factor but absolutely dependent on the wide-domain GATA-binding AreA factor. We show here that a 3-amino-acid deletion in the basic carboxy-terminal sequence of the DNA-binding domain results in a protein with paradoxical properties. Its weak DNA binding is consistent with its loss-of-function phenotype on most nitrogen sources. However, it results in constitutive expression and superinducibility of niiA and niaD. Nucleosome loss of positioning is also constitutive. The mutation partially suppresses null mutations in the transcription factor NirA. AreA binds NirA in vitro, and the mutation does not affect this interaction. The in vivo methylation pattern of the promoter is drastically altered, suggesting the recruitment of one or more unknown transcription factors and/or a local distortion on the DNA double helix.

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Year:  2004        PMID: 15075269      PMCID: PMC387643          DOI: 10.1128/EC.3.2.393-405.2004

Source DB:  PubMed          Journal:  Eukaryot Cell        ISSN: 1535-9786


  62 in total

1.  The GATA factor AreA is essential for chromatin remodelling in a eukaryotic bidirectional promoter.

Authors:  M I Muro-Pastor; R Gonzalez; J Strauss; F Narendja; C Scazzocchio
Journal:  EMBO J       Date:  1999-03-15       Impact factor: 11.598

2.  In situ detection of protein-DNA interactions in filamentous fungi by in vivo footprinting.

Authors:  M F Wolschek; F Narendja; J Karlseder; C P Kubicek; C Scazzocchio; J Strauss
Journal:  Nucleic Acids Res       Date:  1998-08-15       Impact factor: 16.971

3.  Sequence, exon-intron organization, transcription and mutational analysis of prnA, the gene encoding the transcriptional activator of the prn gene cluster in Aspergillus nidulans.

Authors:  B Cazelle; A Pokorska; E Hull; P M Green; G Stanway; C Scazzocchio
Journal:  Mol Microbiol       Date:  1998-04       Impact factor: 3.501

4.  The solution structure of the Leu22-->Val mutant AREA DNA binding domain complexed with a TGATAG core element defines a role for hydrophobic packing in the determination of specificity.

Authors:  M R Starich; M Wikström; S Schumacher; H N Arst; A M Gronenborn; G M Clore
Journal:  J Mol Biol       Date:  1998-04-03       Impact factor: 5.469

5.  Mutations in nirA gene of Aspergillus nidulans and nitrogen metabolism.

Authors:  K N Rand; H N Arst
Journal:  Nature       Date:  1978-04-20       Impact factor: 49.962

6.  Autoregulation of the synthesis of nitrate reductase in Aspergillus nidulans.

Authors:  D J Cove; J A Pateman
Journal:  J Bacteriol       Date:  1969-03       Impact factor: 3.490

7.  Single-step purification of polypeptides expressed in Escherichia coli as fusions with glutathione S-transferase.

Authors:  D B Smith; K S Johnson
Journal:  Gene       Date:  1988-07-15       Impact factor: 3.688

8.  Hematopoietic-specific activators establish an overlapping pattern of histone acetylation and methylation within a mammalian chromatin domain.

Authors:  Carol M Kiekhaefer; Jeffrey A Grass; Kirby D Johnson; Meghan E Boyer; Emery H Bresnick
Journal:  Proc Natl Acad Sci U S A       Date:  2002-10-11       Impact factor: 11.205

9.  The solution structure of a fungal AREA protein-DNA complex: an alternative binding mode for the basic carboxyl tail of GATA factors.

Authors:  M R Starich; M Wikström; H N Arst; G M Clore; A M Gronenborn
Journal:  J Mol Biol       Date:  1998-04-03       Impact factor: 5.469

Review 10.  Mutational analysis of AREA, a transcriptional activator mediating nitrogen metabolite repression in Aspergillus nidulans and a member of the "streetwise" GATA family of transcription factors.

Authors:  R A Wilson; H N Arst
Journal:  Microbiol Mol Biol Rev       Date:  1998-09       Impact factor: 11.056

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  15 in total

1.  Nuclear export of the transcription factor NirA is a regulatory checkpoint for nitrate induction in Aspergillus nidulans.

Authors:  Andreas Bernreiter; Ana Ramon; Javier Fernández-Martínez; Harald Berger; Lidia Araújo-Bazan; Eduardo A Espeso; Robert Pachlinger; Andreas Gallmetzer; Ingund Anderl; Claudio Scazzocchio; Joseph Strauss
Journal:  Mol Cell Biol       Date:  2006-11-20       Impact factor: 4.272

2.  Nitrate assimilation pathway (NAP): role of structural (nit) and transporter (ntr1) genes in Fusarium oxysporum f.sp. lycopersici growth and pathogenicity.

Authors:  Lucia Gomez-Gil; Jesus Camara Almiron; Patricia Lizett Rodriguez Carrillo; Cindy Nayely Olivares Medina; Gustavo Bravo Ruiz; Pamela Romo Rodriguez; Alma Rosa Corrales Escobosa; Felix Gutierrez Corona; M Isabel Roncero
Journal:  Curr Genet       Date:  2017-10-17       Impact factor: 3.886

3.  Nucleosome positioning and histone H3 acetylation are independent processes in the Aspergillus nidulans prnD-prnB bidirectional promoter.

Authors:  Yazmid Reyes-Dominguez; Frank Narendja; Harald Berger; Andreas Gallmetzer; Rafael Fernandez-Martin; Irene Garcia; Claudio Scazzocchio; Joseph Strauss
Journal:  Eukaryot Cell       Date:  2008-02-22

4.  AgtA, the dicarboxylic amino acid transporter of Aspergillus nidulans, is concertedly down-regulated by exquisite sensitivity to nitrogen metabolite repression and ammonium-elicited endocytosis.

Authors:  Angeliki Apostolaki; Zoi Erpapazoglou; Laura Harispe; Maria Billini; Panagiota Kafasla; Dimosthenis Kizis; Miguel Angel Peñalva; Claudio Scazzocchio; Vicky Sophianopoulou
Journal:  Eukaryot Cell       Date:  2009-01-23

5.  Transcriptome analysis of nitrate assimilation in Aspergillus nidulans reveals connections to nitric oxide metabolism.

Authors:  Thorsten Schinko; Harald Berger; Wanseon Lee; Andreas Gallmetzer; Katharina Pirker; Robert Pachlinger; Ingrid Buchner; Thomas Reichenauer; Ulrich Güldener; Joseph Strauss
Journal:  Mol Microbiol       Date:  2010-09-27       Impact factor: 3.501

6.  Community profiling and gene expression of fungal assimilatory nitrate reductases in agricultural soil.

Authors:  Markus Gorfer; Marzena Blumhoff; Sylvia Klaubauf; Alexander Urban; Erich Inselsbacher; Dragana Bandian; Birgit Mitter; Angela Sessitsch; Wolfgang Wanek; Joseph Strauss
Journal:  ISME J       Date:  2011-05-12       Impact factor: 10.302

7.  Phytotoxin production in Aspergillus terreus is regulated by independent environmental signals.

Authors:  Markus Gressler; Florian Meyer; Daniel Heine; Peter Hortschansky; Christian Hertweck; Matthias Brock
Journal:  Elife       Date:  2015-07-14       Impact factor: 8.140

8.  A library-based method to rapidly analyse chromatin accessibility at multiple genomic regions.

Authors:  Asjad Basheer; Harald Berger; Yazmid Reyes-Dominguez; Markus Gorfer; Joseph Strauss
Journal:  Nucleic Acids Res       Date:  2009-02-27       Impact factor: 16.971

9.  Pseudo-constitutivity of nitrate-responsive genes in nitrate reductase mutants.

Authors:  Thorsten Schinko; Andreas Gallmetzer; Sotiris Amillis; Joseph Strauss
Journal:  Fungal Genet Biol       Date:  2013-02-27       Impact factor: 3.495

Review 10.  Histone modifications and chromatin dynamics: a focus on filamentous fungi.

Authors:  Gerald Brosch; Peter Loidl; Stefan Graessle
Journal:  FEMS Microbiol Rev       Date:  2008-01-23       Impact factor: 16.408

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