Literature DB >> 9685506

In situ detection of protein-DNA interactions in filamentous fungi by in vivo footprinting.

M F Wolschek1, F Narendja, J Karlseder, C P Kubicek, C Scazzocchio, J Strauss.   

Abstract

The method described here allows the detection of protein-DNA interactions in vivo in filamentous fungi. We outline culture conditions and conditions of in vivo methylation that permit uniform modification of all cells in an apically growing, non-uniform organism, and subsequent visualization of protected areas by ligation-mediated PCR.

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Substances：

Year:  1998        PMID： 9685506      PMCID： PMC147760          DOI： 10.1093/nar/26.16.3862

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  13 in total

1.  The genetics of Aspergillus nidulans.

Authors:  G PONTECORVO; J A ROPER; L M HEMMONS; K D MACDONALD; A W J BUFTON
Journal:  Adv Genet       Date:  1953       Impact factor: 1.944

2.  In vivo footprinting of a muscle specific enhancer by ligation mediated PCR.

Authors:  P R Mueller; B Wold
Journal:  Science       Date:  1989-11-10       Impact factor: 47.728

3.  Localization of growth and secretion of proteins in Aspergillus niger.

Authors:  H A Wösten; S M Moukha; J H Sietsma; J G Wessels
Journal:  J Gen Microbiol       Date:  1991-08

4.  The regulator of nitrate assimilation in ascomycetes is a dimer which binds a nonrepeated, asymmetrical sequence.

Authors:  J Strauss; M I Muro-Pastor; C Scazzocchio
Journal:  Mol Cell Biol       Date:  1998-03       Impact factor: 4.272

5.  The intergenic region between the divergently transcribed niiA and niaD genes of Aspergillus nidulans contains multiple NirA binding sites which act bidirectionally.

Authors:  P J Punt; J Strauss; R Smit; J R Kinghorn; C A van den Hondel; C Scazzocchio
Journal:  Mol Cell Biol       Date:  1995-10       Impact factor: 4.272

6.  Molecular characterization of a fungal secondary metabolism promoter: transcription of the Aspergillus nidulans isopenicillin N synthetase gene is modulated by upstream negative elements.

Authors:  B Pérez-Esteban; M Orejas; E Gómez-Pardo; M A Peñalva
Journal:  Mol Microbiol       Date:  1993-08       Impact factor: 3.501

7.  nirA, the pathway-specific regulatory gene of nitrate assimilation in Aspergillus nidulans, encodes a putative GAL4-type zinc finger protein and contains four introns in highly conserved regions.

Authors:  G Burger; J Strauss; C Scazzocchio; B F Lang
Journal:  Mol Cell Biol       Date:  1991-11       Impact factor: 4.272

8.  NRE, the major nitrogen regulatory protein of Penicillium chrysogenum, binds specifically to elements in the intergenic promoter regions of nitrate assimilation and penicillin biosynthetic gene clusters.

Authors:  H Haas; G A Marzluf
Journal:  Curr Genet       Date:  1995-07       Impact factor: 3.886

9.  Cloning of the regulatory gene areA mediating nitrogen metabolite repression in Aspergillus nidulans.

Authors:  M X Caddick; H N Arst; L H Taylor; R I Johnson; A G Brownlee
Journal:  EMBO J       Date:  1986-05       Impact factor: 11.598

10.  The regulatory gene areA mediating nitrogen metabolite repression in Aspergillus nidulans. Mutations affecting specificity of gene activation alter a loop residue of a putative zinc finger.

Authors:  B Kudla; M X Caddick; T Langdon; N M Martinez-Rossi; C F Bennett; S Sibley; R W Davies; H N Arst
Journal:  EMBO J       Date:  1990-05       Impact factor: 11.598
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  10 in total

1.  The GATA factor AreA is essential for chromatin remodelling in a eukaryotic bidirectional promoter.

Authors:  M I Muro-Pastor; R Gonzalez; J Strauss; F Narendja; C Scazzocchio
Journal:  EMBO J       Date:  1999-03-15       Impact factor: 11.598

2.  A paradoxical mutant GATA factor.

Authors:  M Isabel Muro-Pastor; Joseph Strauss; Ana Ramón; Claudio Scazzocchio
Journal:  Eukaryot Cell       Date:  2004-04

3.  Chromatin rearrangements in the prnD-prnB bidirectional promoter: dependence on transcription factors.

Authors:  Irene García; Ramón Gonzalez; Dennis Gómez; Claudio Scazzocchio
Journal:  Eukaryot Cell       Date:  2004-02

4.  Nuclear export of the transcription factor NirA is a regulatory checkpoint for nitrate induction in Aspergillus nidulans.

Authors:  Andreas Bernreiter; Ana Ramon; Javier Fernández-Martínez; Harald Berger; Lidia Araújo-Bazan; Eduardo A Espeso; Robert Pachlinger; Andreas Gallmetzer; Ingund Anderl; Claudio Scazzocchio; Joseph Strauss
Journal:  Mol Cell Biol       Date:  2006-11-20       Impact factor: 4.272

5.  Transcriptional regulation of xyn2 in Hypocrea jecorina.

Authors:  Elisabeth Würleitner; Licia Pera; Christian Wacenovsky; Angela Cziferszky; Susanne Zeilinger; Christian P Kubicek; Robert L Mach
Journal:  Eukaryot Cell       Date:  2003-02

6.  Transcriptional regulation of xyn1, encoding xylanase I, in Hypocrea jecorina.

Authors:  Roman Rauscher; Elisabeth Würleitner; Christian Wacenovsky; Nina Aro; Astrid R Stricker; Susanne Zeilinger; Christian P Kubicek; Merja Penttilä; Robert L Mach
Journal:  Eukaryot Cell       Date:  2006-03

7.  Nucleosome transactions on the Hypocrea jecorina (Trichoderma reesei) cellulase promoter cbh2 associated with cellulase induction.

Authors:  S Zeilinger; M Schmoll; M Pail; R L Mach; C P Kubicek
Journal:  Mol Genet Genomics       Date:  2003-08-02       Impact factor: 3.291

8.  A temperature-sensitive expression system based on the Geobacillus stearothermophilus NRS 2004/3a sgsE surface-layer gene promoter.

Authors:  Rene Novotny; Harald Berger; Thorsten Schinko; Paul Messner; Christina Schäffer; Joseph Strauss
Journal:  Biotechnol Appl Biochem       Date:  2008-01       Impact factor: 2.431

9.  Interaction of Yna1 and Yna2 Is Required for Nuclear Accumulation and Transcriptional Activation of the Nitrate Assimilation Pathway in the Yeast Hansenula polymorpha.

Authors:  Lucia Silvestrini; Beatrice Rossi; Andreas Gallmetzer; Martine Mathieu; Claudio Scazzocchio; Enrico Berardi; Joseph Strauss
Journal:  PLoS One       Date:  2015-09-03       Impact factor: 3.240

10.  A highly sensitive in vivo footprinting technique for condition-dependent identification of cis elements.

Authors:  Rita Gorsche; Birgit Jovanovic; Loreta Gudynaite-Savitch; Robert L Mach; Astrid R Mach-Aigner
Journal:  Nucleic Acids Res       Date:  2013-10-03       Impact factor: 16.971
  10 in total

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