Warning: Undefined array key "mm" in /www/wwwroot/www.ai-bt.com/si.php on line 10 Deprecated: trim(): Passing null to parameter #1 ($string) of type string is deprecated in /www/wwwroot/www.ai-bt.com/si.php on line 10 POLYVIEW: a flexible visualization tool for structural and functional annotations of proteins.

Literature DB >> 15073023

POLYVIEW: a flexible visualization tool for structural and functional annotations of proteins.

Aleksey A Porollo¹, Rafal Adamczak, Jaroslaw Meller.

Abstract

UNLABELLED: The POLYVIEW visualization server can be used to generate protein sequence annotations, including secondary structures, relative solvent accessibilities, functional motifs and polymorphic sites. Two-dimensional graphical representations in a customizable format may be generated for both known protein structures and predictions obtained using protein structure prediction servers. POLYVIEW may be used for automated generation of pictures with structural and functional annotations for publications and proteomic on-line resources. AVAILABILITY: http://polyview.cchmc.org.

Mesh：

Substances：
Proteins

Year: 2004 PMID： 15073023 DOI： 10.1093/bioinformatics/bth248

Source DB: PubMed Journal: Bioinformatics ISSN： 1367-4803 Impact factor: 6.937

Keyword Cloud
Cited

60 in total

1. Diversifying evolution of highly pathogenic H5N1 avian influenza virus in Egypt from 2006 to 2011.

Authors: E M Abdelwhab; Abdel-Satar Arafa; Jürgen Stech; Christian Grund; Olga Stech; Marcus Graeber-Gerberding; Martin Beer; Mohamed K Hassan; Mona M Aly; Timm C Harder; Hafez M Hafez
Journal: Virus Genes Date: 2012-06-05 Impact factor: 2.332

2. Novel trans-tail regulation of H2B ubiquitylation and H3K4 methylation by the N terminus of histone H2A.

Authors: Suting Zheng; John J Wyrick; Joseph C Reese
Journal: Mol Cell Biol Date: 2010-05-24 Impact factor: 4.272

3. DomainViz: intuitive visualization of consensus domain distributions across groups of proteins.

Authors: Pascal Schläpfer; Devang Mehta; Cameron Ridderikhoff; R Glen Uhrig
Journal: Nucleic Acids Res Date: 2021-07-02 Impact factor: 16.971

4. Computational analysis and identification of amino acid sites in dengue E proteins relevant to development of diagnostics and vaccines.

Authors: Raja Mazumder; Zhang-Zhi Hu; C R Vinayaka; Jose-Luis Sagripanti; Simon D W Frost; Sergei L Kosakovsky Pond; Cathy H Wu
Journal: Virus Genes Date: 2007-05-17 Impact factor: 2.332

5. Regulation of gene transcription by the histone H2A N-terminal domain.

Authors: Michael A Parra; John J Wyrick
Journal: Mol Cell Biol Date: 2007-08-27 Impact factor: 4.272

6. Novel functional residues in the core domain of histone H2B regulate yeast gene expression and silencing and affect the response to DNA damage.

Authors: McKenna N M Kyriss; Yi Jin; Isaura J Gallegos; James A Sanford; John J Wyrick
Journal: Mol Cell Biol Date: 2010-05-17 Impact factor: 4.272

POLYVIEW: a flexible visualization tool for structural and functional annotations of proteins.

1. Diversifying evolution of highly pathogenic H5N1 avian influenza virus in Egypt from 2006 to 2011.

2. Novel trans-tail regulation of H2B ubiquitylation and H3K4 methylation by the N terminus of histone H2A.

3. DomainViz: intuitive visualization of consensus domain distributions across groups of proteins.

4. Computational analysis and identification of amino acid sites in dengue E proteins relevant to development of diagnostics and vaccines.

5. Regulation of gene transcription by the histone H2A N-terminal domain.

6. Novel functional residues in the core domain of histone H2B regulate yeast gene expression and silencing and affect the response to DNA damage.

7. Fast geometric consensus approach for protein model quality assessment.

8. The Talpid3 gene (KIAA0586) encodes a centrosomal protein that is essential for primary cilia formation.

9. POLYVIEW-MM: web-based platform for animation and analysis of molecular simulations.

10. The physiological importance of photosynthetic ferredoxin NADP+ oxidoreductase (FNR) isoforms in wheat.