Literature DB >> 15070506

Dynamic analysis of neural encoding by point process adaptive filtering.

Uri T Eden1, Loren M Frank, Riccardo Barbieri, Victor Solo, Emery N Brown.   

Abstract

Neural receptive fields are dynamic in that with experience, neurons change their spiking responses to relevant stimuli. To understand how neural systems adapt their representations of biological information, analyses of receptive field plasticity from experimental measurements are crucial. Adaptive signal processing, the well-established engineering discipline for characterizing the temporal evolution of system parameters, suggests a framework for studying the plasticity of receptive fields. We use the Bayes' rule Chapman-Kolmogorov paradigm with a linear state equation and point process observation models to derive adaptive filters appropriate for estimation from neural spike trains. We derive point process filter analogues of the Kalman filter, recursive least squares, and steepest-descent algorithms and describe the properties of these new filters. We illustrate our algorithms in two simulated data examples. The first is a study of slow and rapid evolution of spatial receptive fields in hippocampal neurons. The second is an adaptive decoding study in which a signal is decoded from ensemble neural spiking activity as the receptive fields of the neurons in the ensemble evolve. Our results provide a paradigm for adaptive estimation for point process observations and suggest a practical approach for constructing filtering algorithms to track neural receptive field dynamics on a millisecond timescale.

Mesh:

Year:  2004        PMID: 15070506     DOI: 10.1162/089976604773135069

Source DB:  PubMed          Journal:  Neural Comput        ISSN: 0899-7667            Impact factor:   2.026


  95 in total

1.  CONTINUOUS-TIME FILTERS FOR STATE ESTIMATION FROM POINT PROCESS MODELS OF NEURAL DATA.

Authors:  Uri T Eden; Emery N Brown
Journal:  Stat Sin       Date:  2008       Impact factor: 1.261

2.  Neural decoding based on probabilistic neural network.

Authors:  Yi Yu; Shao-min Zhang; Huai-jian Zhang; Xiao-chun Liu; Qiao-sheng Zhang; Xiao-xiang Zheng; Jian-hua Dai
Journal:  J Zhejiang Univ Sci B       Date:  2010-04       Impact factor: 3.066

Review 3.  Dimensionality reduction for large-scale neural recordings.

Authors:  John P Cunningham; Byron M Yu
Journal:  Nat Neurosci       Date:  2014-08-24       Impact factor: 24.884

4.  Analysis of between-trial and within-trial neural spiking dynamics.

Authors:  Gabriela Czanner; Uri T Eden; Sylvia Wirth; Marianna Yanike; Wendy A Suzuki; Emery N Brown
Journal:  J Neurophysiol       Date:  2008-01-23       Impact factor: 2.714

5.  Neural decoding of hand motion using a linear state-space model with hidden states.

Authors:  Wei Wu; Jayant E Kulkarni; Nicholas G Hatsopoulos; Liam Paninski
Journal:  IEEE Trans Neural Syst Rehabil Eng       Date:  2009-06-02       Impact factor: 3.802

6.  A cocktail party with a cortical twist: how cortical mechanisms contribute to sound segregation.

Authors:  Mounya Elhilali; Shihab A Shamma
Journal:  J Acoust Soc Am       Date:  2008-12       Impact factor: 1.840

7.  Efficient computation of the maximum a posteriori path and parameter estimation in integrate-and-fire and more general state-space models.

Authors:  Shinsuke Koyama; Liam Paninski
Journal:  J Comput Neurosci       Date:  2009-04-28       Impact factor: 1.621

8.  A point process approach to identifying and tracking transitions in neural spiking dynamics in the subthalamic nucleus of Parkinson's patients.

Authors:  Xinyi Deng; Emad N Eskandar; Uri T Eden
Journal:  Chaos       Date:  2013-12       Impact factor: 3.642

9.  A mixed filter algorithm for cognitive state estimation from simultaneously recorded continuous and binary measures of performance.

Authors:  M J Prerau; A C Smith; U T Eden; M Yanike; W A Suzuki; E N Brown
Journal:  Biol Cybern       Date:  2008-04-26       Impact factor: 2.086

10.  Characterizing context-dependent differential firing activity in the hippocampus and entorhinal cortex.

Authors:  Michael J Prerau; Paul A Lipton; Howard B Eichenbaum; Uri T Eden
Journal:  Hippocampus       Date:  2014-02-03       Impact factor: 3.899

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