Literature DB >> 22065511

CONTINUOUS-TIME FILTERS FOR STATE ESTIMATION FROM POINT PROCESS MODELS OF NEURAL DATA.

Uri T Eden1, Emery N Brown.   

Abstract

Neural spike trains, the primary communication signals in the brain, can be accurately modeled as point processes. For many years, significant theoretical work has been done on the construction of exact and approximate filters for state estimation from point process observations in continuous-time. We have previously developed approximate filters for state estimation from point process observations in discrete-time and applied them in the study of neural systems. Here, we present a coherent framework for deriving continuous-time filters from their discrete-counterparts. We present an accessible derivation of the well-known unnormalized conditional density equation for state evolution, construct a new continuous-time filter based on a Gaussian approximation, and propose a method for assessing the validity of the approximation following an approach by Brockett and Clark. We apply these methods to the problem of reconstructing arm reaching movements from simulated neural spiking activity from the primary motor cortex. This work makes explicit the connections between adaptive point process filters for analyzing neural spiking activity in continuous-time, and standard continuous-time filters for state estimation from continuous and point process observations.

Year:  2008        PMID: 22065511      PMCID: PMC3208353     

Source DB:  PubMed          Journal:  Stat Sin        ISSN: 1017-0405            Impact factor:   1.261


  13 in total

1.  Motor cortical representation of speed and direction during reaching.

Authors:  D W Moran; A B Schwartz
Journal:  J Neurophysiol       Date:  1999-11       Impact factor: 2.714

2.  Contrasting patterns of receptive field plasticity in the hippocampus and the entorhinal cortex: an adaptive filtering approach.

Authors:  Loren M Frank; Uri T Eden; Victor Solo; Matthew A Wilson; Emery N Brown
Journal:  J Neurosci       Date:  2002-05-01       Impact factor: 6.167

3.  An analysis of neural receptive field plasticity by point process adaptive filtering.

Authors:  E N Brown; D P Nguyen; L M Frank; M A Wilson; V Solo
Journal:  Proc Natl Acad Sci U S A       Date:  2001-10-09       Impact factor: 11.205

Review 4.  Trajectory estimation from place cell data.

Authors:  N Twum-Danso; R Brockett
Journal:  Neural Netw       Date:  2001 Jul-Sep

5.  Estimating a state-space model from point process observations.

Authors:  Anne C Smith; Emery N Brown
Journal:  Neural Comput       Date:  2003-05       Impact factor: 2.026

6.  A point process framework for relating neural spiking activity to spiking history, neural ensemble, and extrinsic covariate effects.

Authors:  Wilson Truccolo; Uri T Eden; Matthew R Fellows; John P Donoghue; Emery N Brown
Journal:  J Neurophysiol       Date:  2004-09-08       Impact factor: 2.714

7.  Hippocampal plasticity across multiple days of exposure to novel environments.

Authors:  Loren M Frank; Garrett B Stanley; Emery N Brown
Journal:  J Neurosci       Date:  2004-09-01       Impact factor: 6.167

8.  Reconstruction of hand movement trajectories from a dynamic ensemble of spiking motor cortical neurons.

Authors:  U Eden; W Truccolo; M Fellows; J Donoghue; E Brown
Journal:  Conf Proc IEEE Eng Med Biol Soc       Date:  2004

9.  Construction of point process adaptive filter algorithms for neural systems using sequential Monte Carlo methods.

Authors:  Ayla Ergün; Riccardo Barbieri; Uri T Eden; Matthew A Wilson; Emery N Brown
Journal:  IEEE Trans Biomed Eng       Date:  2007-03       Impact factor: 4.538

10.  Analysis of between-trial and within-trial neural spiking dynamics.

Authors:  Gabriela Czanner; Uri T Eden; Sylvia Wirth; Marianna Yanike; Wendy A Suzuki; Emery N Brown
Journal:  J Neurophysiol       Date:  2008-01-23       Impact factor: 2.714

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  5 in total

1.  Clusterless Decoding of Position from Multiunit Activity Using a Marked Point Process Filter.

Authors:  Xinyi Deng; Daniel F Liu; Kenneth Kay; Loren M Frank; Uri T Eden
Journal:  Neural Comput       Date:  2015-05-14       Impact factor: 2.026

2.  Real-Time Point Process Filter for Multidimensional Decoding Problems Using Mixture Models.

Authors:  Mohammad Reza Rezaei; Kensuke Arai; Loren M Frank; Uri T Eden; Ali Yousefi
Journal:  J Neurosci Methods       Date:  2020-11-21       Impact factor: 2.390

3.  Uncoupled analysis of stochastic reaction networks in fluctuating environments.

Authors:  Christoph Zechner; Heinz Koeppl
Journal:  PLoS Comput Biol       Date:  2014-12-04       Impact factor: 4.475

4.  Estimating Dynamic Signals From Trial Data With Censored Values.

Authors:  Ali Yousefi; Darin D Dougherty; Emad N Eskandar; Alik S Widge; Uri T Eden
Journal:  Comput Psychiatr       Date:  2017-10-01

5.  Expectancy-based rhythmic entrainment as continuous Bayesian inference.

Authors:  Jonathan Cannon
Journal:  PLoS Comput Biol       Date:  2021-06-09       Impact factor: 4.475

  5 in total

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