Literature DB >> 15064363

Ded1p, a conserved DExD/H-box translation factor, can promote yeast L-A virus negative-strand RNA synthesis in vitro.

Jean-Leon Chong1, Ray-Yuan Chuang, Luh Tung, Tien-Hsien Chang.   

Abstract

Viruses are intracellular parasites that must use the host machinery to multiply. Identification of the host factors that perform essential functions in viral replication is thus of crucial importance to the understanding of virus-host interactions. Here we describe Ded1p, a highly conserved DExD/H-box translation factor, as a possible host factor recruited by the yeast L-A double-stranded RNA (dsRNA) virus. We found that Ded1p interacts specifically and strongly with Gag, the L-A virus coat protein. Further analysis revealed that Ded1p interacts with the L-A virus in an RNA-independent manner and, as a result, L-A particles can be affinity purified via this interaction. The affinity-purified L-A particles are functional, as they are capable of synthesizing RNA in vitro. Critically, using purified L-A particles, we demonstrated that Ded1p specifically promotes L-A dsRNA replication by accelerating the rate of negative-strand RNA synthesis in vitro. In light of these data, we suggest that Ded1p may be a part of the long sought after activity shown to promote yeast viral dsRNA replication. This and the fact that Ded1p is also required for translating brome mosaic virus RNA2 in yeast thus raise the intriguing possibility that Ded1p is one of the key host factors favored by several evolutionarily related RNA viruses, including the human hepatitis C virus.

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Year:  2004        PMID: 15064363      PMCID: PMC390370          DOI: 10.1093/nar/gkh519

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  49 in total

1.  Specific alterations of U1-C protein or U1 small nuclear RNA can eliminate the requirement of Prp28p, an essential DEAD box splicing factor.

Authors:  J Y Chen; L Stands; J P Staley; R R Jackups; L J Latus; T H Chang
Journal:  Mol Cell       Date:  2001-01       Impact factor: 17.970

2.  Molecular biology. RNP remodeling with DExH/D boxes.

Authors:  C L Will; R Lührmann
Journal:  Science       Date:  2001-03-09       Impact factor: 47.728

Review 3.  DExD/H box RNA helicases: from generic motors to specific dissociation functions.

Authors:  N K Tanner; P Linder
Journal:  Mol Cell       Date:  2001-08       Impact factor: 17.970

4.  Host factors in positive-strand RNA virus genome replication.

Authors:  Paul Ahlquist; Amine O Noueiry; Wai-Ming Lee; David B Kushner; Billy T Dye
Journal:  J Virol       Date:  2003-08       Impact factor: 5.103

5.  L-A virus at 3.4 A resolution reveals particle architecture and mRNA decapping mechanism.

Authors:  Hisashi Naitow; Jinghua Tang; Mary Canady; Reed B Wickner; John E Johnson
Journal:  Nat Struct Biol       Date:  2002-10

6.  A mechanism for initiating RNA-dependent RNA polymerization.

Authors:  S J Butcher; J M Grimes; E V Makeyev; D H Bamford; D I Stuart
Journal:  Nature       Date:  2001-03-08       Impact factor: 49.962

7.  The hepatitis C viral NS3 protein is a processive DNA helicase with cofactor enhanced RNA unwinding.

Authors:  Phillip S Pang; Eckhard Jankowsky; Paul J Planet; Anna Marie Pyle
Journal:  EMBO J       Date:  2002-03-01       Impact factor: 11.598

8.  A positive-strand RNA virus replication complex parallels form and function of retrovirus capsids.

Authors:  Michael Schwartz; Jianbo Chen; Michael Janda; Michael Sullivan; Johan den Boon; Paul Ahlquist
Journal:  Mol Cell       Date:  2002-03       Impact factor: 17.970

9.  Yeast Lsm1p-7p/Pat1p deadenylation-dependent mRNA-decapping factors are required for brome mosaic virus genomic RNA translation.

Authors:  Amine O Noueiry; Juana Diez; Shaun P Falk; Jianbo Chen; Paul Ahlquist
Journal:  Mol Cell Biol       Date:  2003-06       Impact factor: 4.272

Review 10.  Brome mosaic virus RNA replication: revealing the role of the host in RNA virus replication.

Authors:  Amine O Noueiry; Paul Ahlquist
Journal:  Annu Rev Phytopathol       Date:  2003-03-10       Impact factor: 13.078

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  8 in total

Review 1.  Plant virus RNAs. Coordinated recruitment of conserved host functions by (+) ssRNA viruses during early infection events.

Authors:  Karine Thivierge; Valérie Nicaise; Philippe J Dufresne; Sophie Cotton; Jean-François Laliberté; Olivier Le Gall; Marc G Fortin
Journal:  Plant Physiol       Date:  2005-08       Impact factor: 8.340

2.  Template role of double-stranded RNA in tombusvirus replication.

Authors:  Nikolay Kovalev; Judit Pogany; Peter D Nagy
Journal:  J Virol       Date:  2014-03-05       Impact factor: 5.103

3.  DEAD-box RNA helicases Dbp2, Ded1 and Mss116 bind to G-quadruplex nucleic acids and destabilize G-quadruplex RNA.

Authors:  Jun Gao; Alicia K Byrd; Boris L Zybailov; John C Marecki; Michael J Guderyon; Andrea D Edwards; Shubeena Chib; Kirk L West; Zachary J Waldrip; Samuel G Mackintosh; Zhaofeng Gao; Andrea A Putnam; Eckhard Jankowsky; Kevin D Raney
Journal:  Chem Commun (Camb)       Date:  2019-04-11       Impact factor: 6.222

4.  Complete genome sequence analysis of an American isolate of Grapevine virus E.

Authors:  Olufemi J Alabi; Sudarsana Poojari; Kara Sarver; Robert R Martin; Rayapati A Naidu
Journal:  Virus Genes       Date:  2013-01-08       Impact factor: 2.332

5.  Identification of essential host factors affecting tombusvirus RNA replication based on the yeast Tet promoters Hughes Collection.

Authors:  Yi Jiang; Elena Serviene; Jozsef Gal; Tadas Panavas; Peter D Nagy
Journal:  J Virol       Date:  2006-08       Impact factor: 5.103

6.  A Co-Opted DEAD-Box RNA helicase enhances tombusvirus plus-strand synthesis.

Authors:  Nikolay Kovalev; Judit Pogany; Peter D Nagy
Journal:  PLoS Pathog       Date:  2012-02-16       Impact factor: 6.823

7.  RNA viruses redirect host factors to better amplify their genome.

Authors:  Anna M Boguszewska-Chachulska; Anne-Lise Haenni
Journal:  Adv Virus Res       Date:  2005       Impact factor: 9.937

8.  The DEAD-box helicase Ded1 from yeast is an mRNP cap-associated protein that shuttles between the cytoplasm and nucleus.

Authors:  Meriem Senissar; Agnès Le Saux; Naïma Belgareh-Touzé; Céline Adam; Josette Banroques; N Kyle Tanner
Journal:  Nucleic Acids Res       Date:  2014-07-10       Impact factor: 16.971

  8 in total

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