Literature DB >> 23296875

Complete genome sequence analysis of an American isolate of Grapevine virus E.

Olufemi J Alabi1, Sudarsana Poojari, Kara Sarver, Robert R Martin, Rayapati A Naidu.   

Abstract

The complete genome sequence of Grapevine virus E (GVE) collected from a red-berried wine grape cultivar (Cabernet Sauvignon) in Washington State was determined. The 7,568 nucleotide long genome of GVE is more similar in sequence identity with a GVE isolate from a wine grape cv. Shiraz from South Africa when compared with an isolate from "Aki Queen" grape from Japan. Like GVE isolates from South Africa and Japan, the Washington isolate encodes five open reading frames (ORFs) and the overall genome organization is identical among these isolates. In addition to AlkB domain, a DExD domain, belonging to the DEAD-like helicases superfamily, was present upstream of the helicase domain in the replicase ORF of the virus.

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Year:  2013        PMID： 23296875     DOI： 10.1007/s11262-012-0872-0

Source DB:  PubMed          Journal:  Virus Genes        ISSN： 0920-8569            Impact factor:   2.332


  8 in total

1.  Ded1p, a conserved DExD/H-box translation factor, can promote yeast L-A virus negative-strand RNA synthesis in vitro.

Authors:  Jean-Leon Chong; Ray-Yuan Chuang; Luh Tung; Tien-Hsien Chang
Journal:  Nucleic Acids Res       Date:  2004-04-02       Impact factor: 16.971

2.  The first complete nucleotide sequence of a grapevine virus E variant.

Authors:  Beatrix Coetzee; Hans J Maree; Dirk Stephan; Michael-John Freeborough; Johan T Burger
Journal:  Arch Virol       Date:  2010-05-16       Impact factor: 2.574

3.  MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods.

Authors:  Koichiro Tamura; Daniel Peterson; Nicholas Peterson; Glen Stecher; Masatoshi Nei; Sudhir Kumar
Journal:  Mol Biol Evol       Date:  2011-05-04       Impact factor: 16.240

4.  The V proteins of paramyxoviruses bind the IFN-inducible RNA helicase, mda-5, and inhibit its activation of the IFN-beta promoter.

Authors:  J Andrejeva; K S Childs; D F Young; T S Carlos; N Stock; S Goodbourn; R E Randall
Journal:  Proc Natl Acad Sci U S A       Date:  2004-11-24       Impact factor: 11.205

Review 5.  The grapevine-infecting vitiviruses, with particular reference to grapevine virus A.

Authors:  Jacques du Preez; Dirk Stephan; Munir Mawassi; Johan T Burger
Journal:  Arch Virol       Date:  2011-07-22       Impact factor: 2.574

6.  Identification and characterization of a new vitivirus from grapevine.

Authors:  Ryoji Nakaune; Satoshi Toda; Masatoshi Mochizuki; Masaaki Nakano
Journal:  Arch Virol       Date:  2008-09-11       Impact factor: 2.574

7.  The RNA helicase RIG-I has an essential function in double-stranded RNA-induced innate antiviral responses.

Authors:  Mitsutoshi Yoneyama; Mika Kikuchi; Takashi Natsukawa; Noriaki Shinobu; Tadaatsu Imaizumi; Makoto Miyagishi; Kazunari Taira; Shizuo Akira; Takashi Fujita
Journal:  Nat Immunol       Date:  2004-06-20       Impact factor: 25.606

8.  CDD: a Conserved Domain Database for the functional annotation of proteins.

Authors:  Aron Marchler-Bauer; Shennan Lu; John B Anderson; Farideh Chitsaz; Myra K Derbyshire; Carol DeWeese-Scott; Jessica H Fong; Lewis Y Geer; Renata C Geer; Noreen R Gonzales; Marc Gwadz; David I Hurwitz; John D Jackson; Zhaoxi Ke; Christopher J Lanczycki; Fu Lu; Gabriele H Marchler; Mikhail Mullokandov; Marina V Omelchenko; Cynthia L Robertson; James S Song; Narmada Thanki; Roxanne A Yamashita; Dachuan Zhang; Naigong Zhang; Chanjuan Zheng; Stephen H Bryant
Journal:  Nucleic Acids Res       Date:  2010-11-24       Impact factor: 16.971
  8 in total

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