Literature DB >> 15041690

Photoisomerization and photoionization of the photoactive yellow protein chromophore in solution.

Delmar S Larsen1, Mikas Vengris, Ivo H M van Stokkum, Michael A van der Horst, Frank L de Weerd, Klaas J Hellingwerf, Rienk van Grondelle.   

Abstract

Dispersed pump-dump-probe spectroscopy has the ability to characterize and identify the underlying ultrafast dynamical processes in complicated chemical and biological systems. This technique builds on traditional pump-probe techniques by exploring both ground- and excited-state dynamics and characterizing the connectivity between constituent transient states. We have used the dispersed pump-dump-probe technique to investigate the ground-state dynamics and competing excited-state processes in the excitation-induced ultrafast dynamics of thiomethyl p-coumaric acid, a model chromophore for the photoreceptor photoactive yellow protein. Our results demonstrate the parallel formation of two relaxation pathways (with multiple transient states) that jointly lead to two different types of photochemistry: cis-trans isomerization and detachment of a hydrated electron. The relative transition rates and quantum yields of both pathways have been determined. We find that the relaxation of the photoexcited chromophores involves multiple, transient ground-state intermediates and the chromophore in solution does not generate persistent photoisomerized products, but instead undergoes photoionization resulting in the generation of detached electrons and radicals. These results are of great value in interpreting the more complex dynamical changes in the optical properties of the photoactive yellow protein.

Entities:  

Mesh:

Substances:

Year:  2004        PMID: 15041690      PMCID: PMC1304101          DOI: 10.1016/S0006-3495(04)74309-X

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  23 in total

1.  A simple approach for improving the hybrid MMVB force field: application to the photoisomerization of s-cis butadiene.

Authors:  Marco Garavelli; Fabrizio Ruggeri; Francois Ogliaro; Michael J Bearpark; Fernando Bernardi; Massimo Olivucci; Michael A Robb
Journal:  J Comput Chem       Date:  2003-08       Impact factor: 3.376

2.  Ab initio excited-state dynamics of the photoactive yellow protein chromophore.

Authors:  Chaehyuk Ko; Benjamin Levine; A Toniolo; Leslie Manohar; Seth Olsen; Hans-Joachim Werner; Todd J Martínez
Journal:  J Am Chem Soc       Date:  2003-10-22       Impact factor: 15.419

3.  Formation of a new buried charge drives a large-amplitude protein quake in photoreceptor activation.

Authors:  A Xie; L Kelemen; J Hendriks; B J White; K J Hellingwerf; W D Hoff
Journal:  Biochemistry       Date:  2001-02-13       Impact factor: 3.162

4.  Structure at 0.85 A resolution of an early protein photocycle intermediate.

Authors:  U K Genick; S M Soltis; P Kuhn; I L Canestrelli; E D Getzoff
Journal:  Nature       Date:  1998-03-12       Impact factor: 49.962

5.  Evidence for trans-cis isomerization of the p-coumaric acid chromophore as the photochemical basis of the photocycle of photoactive yellow protein.

Authors:  R Kort; H Vonk; X Xu; W D Hoff; W Crielaard; K J Hellingwerf
Journal:  FEBS Lett       Date:  1996-03-11       Impact factor: 4.124

6.  Measurement and global analysis of the absorbance changes in the photocycle of the photoactive yellow protein from Ectothiorhodospira halophila.

Authors:  W D Hoff; I H van Stokkum; H J van Ramesdonk; M E van Brederode; A M Brouwer; J C Fitch; T E Meyer; R van Grondelle; K J Hellingwerf
Journal:  Biophys J       Date:  1994-10       Impact factor: 4.033

7.  Glu46 donates a proton to the 4-hydroxycinnamate anion chromophore during the photocycle of photoactive yellow protein.

Authors:  A Xie; W D Hoff; A R Kroon; K J Hellingwerf
Journal:  Biochemistry       Date:  1996-11-26       Impact factor: 3.162

8.  The eubacterium Ectothiorhodospira halophila is negatively phototactic, with a wavelength dependence that fits the absorption spectrum of the photoactive yellow protein.

Authors:  W W Sprenger; W D Hoff; J P Armitage; K J Hellingwerf
Journal:  J Bacteriol       Date:  1993-05       Impact factor: 3.490

9.  Thiol ester-linked p-coumaric acid as a new photoactive prosthetic group in a protein with rhodopsin-like photochemistry.

Authors:  W D Hoff; P Düx; K Hård; B Devreese; I M Nugteren-Roodzant; W Crielaard; R Boelens; R Kaptein; J van Beeumen; K J Hellingwerf
Journal:  Biochemistry       Date:  1994-11-29       Impact factor: 3.162

10.  Complete chemical structure of photoactive yellow protein: novel thioester-linked 4-hydroxycinnamyl chromophore and photocycle chemistry.

Authors:  M Baca; G E Borgstahl; M Boissinot; P M Burke; D R Williams; K A Slater; E D Getzoff
Journal:  Biochemistry       Date:  1994-12-06       Impact factor: 3.162

View more
  12 in total

1.  Contrasting the excited-state dynamics of the photoactive yellow protein chromophore: protein versus solvent environments.

Authors:  Mikas Vengris; Michael A van der Horst; Goran Zgrablic; Ivo H M van Stokkum; Stefan Haacke; Majed Chergui; Klaas J Hellingwerf; Rienk van Grondelle; Delmar S Larsen
Journal:  Biophys J       Date:  2004-09       Impact factor: 4.033

2.  Incoherent manipulation of the photoactive yellow protein photocycle with dispersed pump-dump-probe spectroscopy.

Authors:  Delmar S Larsen; Ivo H M van Stokkum; Mikas Vengris; Michael A van Der Horst; Frank L de Weerd; Klaas J Hellingwerf; Rienk van Grondelle
Journal:  Biophys J       Date:  2004-09       Impact factor: 4.033

3.  Uncovering the hidden ground state of green fluorescent protein.

Authors:  John T M Kennis; Delmar S Larsen; Ivo H M van Stokkum; Mikas Vengris; Jasper J van Thor; Rienk van Grondelle
Journal:  Proc Natl Acad Sci U S A       Date:  2004-12-17       Impact factor: 11.205

4.  Spectral tuning of the photoactive yellow protein chromophore by H-bonding.

Authors:  J Rajput; D B Rahbek; G Aravind; L H Andersen
Journal:  Biophys J       Date:  2010-02-03       Impact factor: 4.033

5.  Light-enhanced catalysis by pyridoxal phosphate-dependent aspartate aminotransferase.

Authors:  Melissa P Hill; Elizabeth C Carroll; Mai C Vang; Trevor A Addington; Michael D Toney; Delmar S Larsen
Journal:  J Am Chem Soc       Date:  2010-11-08       Impact factor: 15.419

6.  Femtosecond structural dynamics drives the trans/cis isomerization in photoactive yellow protein.

Authors:  Kanupriya Pande; Christopher D M Hutchison; Gerrit Groenhof; Andy Aquila; Josef S Robinson; Jason Tenboer; Shibom Basu; Sébastien Boutet; Daniel P DePonte; Mengning Liang; Thomas A White; Nadia A Zatsepin; Oleksandr Yefanov; Dmitry Morozov; Dominik Oberthuer; Cornelius Gati; Ganesh Subramanian; Daniel James; Yun Zhao; Jake Koralek; Jennifer Brayshaw; Christopher Kupitz; Chelsie Conrad; Shatabdi Roy-Chowdhury; Jesse D Coe; Markus Metz; Paulraj Lourdu Xavier; Thomas D Grant; Jason E Koglin; Gihan Ketawala; Raimund Fromme; Vukica Šrajer; Robert Henning; John C H Spence; Abbas Ourmazd; Peter Schwander; Uwe Weierstall; Matthias Frank; Petra Fromme; Anton Barty; Henry N Chapman; Keith Moffat; Jasper J van Thor; Marius Schmidt
Journal:  Science       Date:  2016-05-05       Impact factor: 47.728

7.  Absorption spectra of photoactive yellow protein chromophores in vacuum.

Authors:  I B Nielsen; S Boyé-Péronne; M O A El Ghazaly; M B Kristensen; S Brøndsted Nielsen; L H Andersen
Journal:  Biophys J       Date:  2005-07-22       Impact factor: 4.033

8.  Spectroscopic characterization of the excitation energy transfer in the fucoxanthin-chlorophyll protein of diatoms.

Authors:  Emmanouil Papagiannakis; Ivo H M van Stokkum; Holger Fey; Claudia Büchel; Rienk van Grondelle
Journal:  Photosynth Res       Date:  2005-11       Impact factor: 3.573

9.  Second-chance forward isomerization dynamics of the red/green cyanobacteriochrome NpR6012g4 from Nostoc punctiforme.

Authors:  Peter W Kim; Lucy H Freer; Nathan C Rockwell; Shelley S Martin; J Clark Lagarias; Delmar S Larsen
Journal:  J Am Chem Soc       Date:  2011-12-15       Impact factor: 15.419

10.  Unraveling the Primary Isomerization Dynamics in Cyanobacterial Phytochrome Cph1 with Multi-pulse Manipulations.

Authors:  Peter W Kim; Nathan C Rockwell; Lucy H Freer; Che-Wei Chang; Shelley S Martin; J Clark Lagarias; Delmar S Larsen
Journal:  J Phys Chem Lett       Date:  2013-07-20       Impact factor: 6.475

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.