Literature DB >> 12827677

A simple approach for improving the hybrid MMVB force field: application to the photoisomerization of s-cis butadiene.

Marco Garavelli1, Fabrizio Ruggeri, Francois Ogliaro, Michael J Bearpark, Fernando Bernardi, Massimo Olivucci, Michael A Robb.   

Abstract

MMVB is a QM/MM hybrid method, consisting of a molecular mechanics force field coupled to a valence bond Heisenberg Hamiltonian parametrized from ab initio CASSCF calculations on several prototype molecules. The Heisenberg Hamiltonian matrix elements Q(ij) and K(ij), whose expressions are partitioned here into a primary contribution and second-order correction terms, are calculated analytically in MMVB. When the original MMVB force field fails to produce potential energy surfaces accurate enough for dynamics calculations, we show that significant improvements can be made by refitting the second-order correction terms for the particular molecule(s) being studied. This "local" reparametrization is based on values of K(ij) extracted (using effective Hamiltonian techniques) from CASSCF calculations on the same molecule(s). The method is demonstrated for the photoisomerization of s-cis butadiene, and we explain how the correction terms that enabled a successful MMVB dynamics study [Garavelli, M.; Bernardi, F.; Olivucci, M.; Bearpark, M. J.; Klein, S.; Robb, M. A. J Phys Chem A 2001, 105, 11496] were refitted. Copyright 2003 Wiley Periodicals, Inc.

Entities:  

Year:  2003        PMID: 12827677     DOI: 10.1002/jcc.10278

Source DB:  PubMed          Journal:  J Comput Chem        ISSN: 0192-8651            Impact factor:   3.376


  1 in total

1.  Photoisomerization and photoionization of the photoactive yellow protein chromophore in solution.

Authors:  Delmar S Larsen; Mikas Vengris; Ivo H M van Stokkum; Michael A van der Horst; Frank L de Weerd; Klaas J Hellingwerf; Rienk van Grondelle
Journal:  Biophys J       Date:  2004-04       Impact factor: 4.033

  1 in total

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