Literature DB >> 1504051

A graphics program for the analysis and display of molecular dynamics trajectories.

L Laaksonen1.   

Abstract

The program SCARECROW has been developed to help the molecular modeler to analyze and display the very big and complex data files produced by molecular dynamics programs. The molecular graphics program SCARECROW is written to support the display, animation, and extensive analysis of molecular dynamics trajectories. Using the macro language it is easy to make scripts for video animation and for the automated display and analysis of time series. Extensive coloring and atom selection commands are included to help the user to focus on relevant regions of the molecule. Time series can be produced and viewed on the screen or transferred to other programs.

Mesh：

Year:  1992        PMID： 1504051     DOI： 10.1016/0263-7855(92)80007-z

Source DB:  PubMed          Journal:  J Mol Graph        ISSN： 0263-7855


  47 in total

1.  An electronic effect on protein structure.

Authors:  Matthew P Hinderaker; Ronald T Raines
Journal:  Protein Sci       Date:  2003-06       Impact factor: 6.725

2.  Energetic and entropic contributions to the interactions between like-charged groups in cationic peptides: A molecular dynamics simulation study.

Authors:  Marcos Villarreal; Guillermo Montich
Journal:  Protein Sci       Date:  2002-08       Impact factor: 6.725

3.  Bisamidate and mixed amine/amidate NiN2S2 complexes as models for nickel-containing acetyl coenzyme A synthase and superoxide dismutase: an experimental and computational study.

Authors:  Vaidyanathan Mathrubootham; Jason Thomas; Richard Staples; John McCraken; Jason Shearer; Eric L Hegg
Journal:  Inorg Chem       Date:  2010-06-21       Impact factor: 5.165

4.  Spectroscopic and computational investigation of three Cys-to-Ser mutants of nickel superoxide dismutase: insight into the roles played by the Cys2 and Cys6 active-site residues.

Authors:  Olivia E Johnson; Kelly C Ryan; Michael J Maroney; Thomas C Brunold
Journal:  J Biol Inorg Chem       Date:  2010-03-24       Impact factor: 3.358

5.  Influence of conformation on the representation of small flexible molecules at low resolution: alignment of endothiapepsin ligands.

Authors:  Laurence Leherte; Nathalie Meurice; Daniel P Vercauteren
Journal:  J Comput Aided Mol Des       Date:  2005-11-16       Impact factor: 3.686

6.  ParaFrag--an approach for surface-based similarity comparison of molecular fragments.

Authors:  Arjen-Joachim Jakobi; Harald Mauser; Timothy Clark
Journal:  J Mol Model       Date:  2008-05-01       Impact factor: 1.810

7.  Computational quest for spherical C12B68 fullerenes with "magic" π-electrons and quasi-planar tetra-coordinated carbon.

Authors:  Fengyu Li; De-en Jiang; Zhongfang Chen
Journal:  J Mol Model       Date:  2014-02-14       Impact factor: 1.810

8.  Hydrogen bond donation to the heme distal ligand of Staphylococcus aureus IsdG tunes the electronic structure.

Authors:  Cheryl L Lockhart; Matthew A Conger; Dylanger S Pittman; Matthew D Liptak
Journal:  J Biol Inorg Chem       Date:  2015-04-25       Impact factor: 3.358

9.  Spectroscopic and computational characterization of the base-off forms of cob(II)alamin.

Authors:  Matthew D Liptak; Angela S Fleischhacker; Rowena G Matthews; Joshua Telser; Thomas C Brunold
Journal:  J Phys Chem B       Date:  2009-04-16       Impact factor: 2.991

10.  Insight into the copper coordination environment in the prion protein through density functional theory calculations of EPR parameters.

Authors:  William M Ames; Sarah C Larsen
Journal:  J Biol Inorg Chem       Date:  2009-01-31       Impact factor: 3.358
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.