Literature DB >> 15038713

Sequence-specific assignments of methyl groups in high-molecular weight proteins.

Daiwen Yang1, Yu Zheng, Dingjiang Liu, Daniel F Wyss.   

Abstract

A new 3D multiple-quantum (H)CCmHm-TOCSY experiment is proposed to assign methyl resonances in high-molecular weight proteins, on the basis of spectral patterns and prior backbone assignments. The favorable relaxation properties of the multiple-quantum coherences and the slow decays of in-phase methyl 13C magnetizations optimize performance of the proposed experiment for application to large proteins. The experiment has been demonstrated on an acyl carrier protein synthase (trimer, 42 kDa, overall correlation time of 26 ns) at 25 degrees C, and 63 out of 67 nonmethionine methyl groups have been assigned.

Entities:  

Mesh:

Substances:

Year:  2004        PMID: 15038713     DOI: 10.1021/ja039102q

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  26 in total

1.  Efficient assignment of methyl resonances: enhanced sensitivity by gradient selection in a DE-MQ-(H)CC(m)Ht (m)-TOCSY experiment.

Authors:  Perttu Permi; Helena Tossavainen; Maarit Hellman
Journal:  J Biomol NMR       Date:  2004-11       Impact factor: 2.835

2.  Observation of intermolecular interactions in large protein complexes by 2D-double difference nuclear Overhauser enhancement spectroscopy: application to the 44 kDa interferon-receptor complex.

Authors:  Ilona Nudelman; Sabine R Akabayov; Tali Scherf; Jacob Anglister
Journal:  J Am Chem Soc       Date:  2011-08-23       Impact factor: 15.419

3.  Ligand Entry into Fatty Acid Binding Protein via Local Unfolding Instead of Gap Widening.

Authors:  Tianshu Xiao; Yimei Lu; Jing-Song Fan; Daiwen Yang
Journal:  Biophys J       Date:  2019-12-14       Impact factor: 4.033

4.  Protein-ligand structure guided by backbone and side-chain proton chemical shift perturbations.

Authors:  Clémentine Aguirre; Tim ten Brink; Olivier Cala; Jean-François Guichou; Isabelle Krimm
Journal:  J Biomol NMR       Date:  2014-09-26       Impact factor: 2.835

5.  A New Method for Determining Structure Ensemble: Application to a RNA Binding Di-Domain Protein.

Authors:  Wei Liu; Jingfeng Zhang; Jing-Song Fan; Giancarlo Tria; Gerhard Grüber; Daiwen Yang
Journal:  Biophys J       Date:  2016-05-10       Impact factor: 4.033

6.  Towards unambiguous assignment of methyl-containing residues by double and triple sensitivity-enhanced HCCmHm-TOCSY experiments.

Authors:  Peter Würtz; Maarit Hellman; Helena Tossavainen; Perttu Permi
Journal:  J Biomol NMR       Date:  2006-09-09       Impact factor: 2.835

7.  13C-detected HN(CA)C and HMCMC experiments using a single methyl-reprotonated sample for unambiguous methyl resonance assignment.

Authors:  Kaifeng Hu; Beat Vögeli; G Marius Clore
Journal:  J Biomol NMR       Date:  2006-10-12       Impact factor: 2.835

8.  Structure and membrane interaction of myristoylated ARF1.

Authors:  Yizhou Liu; Richard A Kahn; James H Prestegard
Journal:  Structure       Date:  2009-01-14       Impact factor: 5.006

9.  Selective backbone labelling of ILV methyl labelled proteins.

Authors:  Nathalie Sibille; Xavier Hanoulle; Fanny Bonachera; Dries Verdegem; Isabelle Landrieu; Jean-Michel Wieruszeski; Guy Lippens
Journal:  J Biomol NMR       Date:  2009-03-14       Impact factor: 2.835

10.  A comparative NMR study of the polypeptide backbone dynamics of hemoglobin in the deoxy and carbonmonoxy forms.

Authors:  Xiang-Jin Song; Yue Yuan; Virgil Simplaceanu; Sarata Chandra Sahu; Nancy T Ho; Chien Ho
Journal:  Biochemistry       Date:  2007-05-12       Impact factor: 3.162

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.