Literature DB >> 15034178

Beyond the diffusion limit: Water flow through the empty bacterial potassium channel.

Sapar M Saparov1, Peter Pohl.   

Abstract

Water molecules are constrained to move with K+ ions through the narrow part of the Streptomyces lividans K+ channel because of the single-file nature of transport. In the presence of an osmotic gradient, a water molecule requires <10 ps to cross the purified protein reconstituted into planar bilayers. Rinsing K+ out of the channel, water may be 1,000 times faster than the fastest experimentally observed K+ ion and 20 times faster than the one-dimensional bulk diffusion of water. Both the anomalously high water mobility and its inhibition observed at high K+ concentrations are consistent with the view that liquid-vapor oscillations occur because of geometrical confinements of water in the selectivity filter. These oscillations, where the chain of molecules imbedded in the channel (the "liquid") cooperatively exits the channel, leaving behind a near vacuum (the "vapor"), thus far have only been discovered in hydrophobic nanopores by molecular dynamics simulations [Hummer, G., Rasaiah, J. C. &amp; Noworyta, J. P. (2001) Nature 414, 188-190; and Beckstein, O. &amp; Sansom, M. S. P. (2003) Proc. Natl. Acad. Sci. USA 100, 7063-7068].

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Year:  2004        PMID: 15034178      PMCID: PMC387329          DOI: 10.1073/pnas.0308309101

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  39 in total

1.  The cavity and pore helices in the KcsA K+ channel: electrostatic stabilization of monovalent cations.

Authors:  B Roux; R MacKinnon
Journal:  Science       Date:  1999-07-02       Impact factor: 47.728

2.  Exploring the open pore of the potassium channel from Streptomyces lividans.

Authors:  D Meuser; H Splitt; R Wagner; H Schrempf
Journal:  FEBS Lett       Date:  1999-12-03       Impact factor: 4.124

3.  Desformylgramicidin: a model channel with an extremely high water permeability.

Authors:  S M Saparov; Y N Antonenko; R E Koeppe; P Pohl
Journal:  Biophys J       Date:  2000-11       Impact factor: 4.033

4.  Energetic optimization of ion conduction rate by the K+ selectivity filter.

Authors:  J H Morais-Cabral; Y Zhou; R MacKinnon
Journal:  Nature       Date:  2001-11-01       Impact factor: 49.962

5.  The potassium permeability of a giant nerve fibre.

Authors:  A L HODGKIN; R D KEYNES
Journal:  J Physiol       Date:  1955-04-28       Impact factor: 5.182

Review 6.  Water permeability measurement in living cells and complex tissues.

Authors:  A S Verkman
Journal:  J Membr Biol       Date:  2000-01-15       Impact factor: 1.843

Review 7.  Effects of unstirred layers on membrane phenomena.

Authors:  P H Barry; J M Diamond
Journal:  Physiol Rev       Date:  1984-07       Impact factor: 37.312

Review 8.  Water permeability of lipid membranes.

Authors:  R Fettiplace; D A Haydon
Journal:  Physiol Rev       Date:  1980-04       Impact factor: 37.312

9.  Water permeation through gramicidin A: desformylation and the double helix: a molecular dynamics study.

Authors:  Bert L de Groot; D Peter Tieleman; Peter Pohl; Helmut Grubmüller
Journal:  Biophys J       Date:  2002-06       Impact factor: 4.033

10.  Na+ block and permeation in a K+ channel of known structure.

Authors:  Crina M Nimigean; Christopher Miller
Journal:  J Gen Physiol       Date:  2002-09       Impact factor: 4.086

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  23 in total

1.  Energy variational analysis of ions in water and channels: Field theory for primitive models of complex ionic fluids.

Authors:  Bob Eisenberg; Yunkyong Hyon; Chun Liu
Journal:  J Chem Phys       Date:  2010-09-14       Impact factor: 3.488

2.  Molecular dynamics simulation of water permeation through the alpha-hemolysin channel.

Authors:  Jirasak Wong-Ekkabut; Mikko Karttunen
Journal:  J Biol Phys       Date:  2015-08-12       Impact factor: 1.365

3.  Ion transport through membrane-spanning nanopores studied by molecular dynamics simulations and continuum electrostatics calculations.

Authors:  Christine Peter; Gerhard Hummer
Journal:  Biophys J       Date:  2005-07-08       Impact factor: 4.033

4.  Ion conductance vs. pore gating and selectivity in KcsA channel: modeling achievements and perspectives.

Authors:  Céline Boiteux; Sebastian Kraszewski; Christophe Ramseyer; Claude Girardet
Journal:  J Mol Model       Date:  2007-04-06       Impact factor: 1.810

5.  Bubbles, gating, and anesthetics in ion channels.

Authors:  Roland Roth; Dirk Gillespie; Wolfgang Nonner; Robert E Eisenberg
Journal:  Biophys J       Date:  2008-01-30       Impact factor: 4.033

6.  Determinants of water permeability through nanoscopic hydrophilic channels.

Authors:  Guillem Portella; Bert L de Groot
Journal:  Biophys J       Date:  2009-02       Impact factor: 4.033

7.  Molecular dynamics study of Na⁺ transportation in a cyclic peptide nanotube and its influences on water behaviors in the tube.

Authors:  Xuezeng Song; Jianfen Fan; Dongyan Liu; Hui Li; Rui Li
Journal:  J Mol Model       Date:  2013-07-31       Impact factor: 1.810

8.  A permeation theory for single-file ion channels: one- and two-step models.

Authors:  Peter Hugo Nelson
Journal:  J Chem Phys       Date:  2011-04-28       Impact factor: 3.488

9.  Molecular dynamics of ion transport through the open conformation of a bacterial voltage-gated sodium channel.

Authors:  Martin B Ulmschneider; Claire Bagnéris; Emily C McCusker; Paul G Decaen; Markus Delling; David E Clapham; Jakob P Ulmschneider; B A Wallace
Journal:  Proc Natl Acad Sci U S A       Date:  2013-03-29       Impact factor: 11.205

10.  Intrinsic Free Energy of the Conformational Transition of the KcsA Signature Peptide from Conducting to Nonconducting State.

Authors:  Ilja V Khavrutskii; Mikolai Fajer; J Andrew McCammon
Journal:  J Chem Theory Comput       Date:  2008-09-09       Impact factor: 6.006

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