Literature DB >> 15020469

On the rate and linearity of viability declines in Drosophila mutation-accumulation experiments: genomic mutation rates and synergistic epistasis revisited.

James D Fry1.   

Abstract

High rates of deleterious mutations could severely reduce the fitness of populations, even endangering their persistence; these effects would be mitigated if mutations synergize each others' effects. An experiment by Mukai in the 1960s gave evidence that in Drosophila melanogaster, viability-depressing mutations occur at the surprisingly high rate of around one per zygote and that the mutations interact synergistically. A later experiment by Ohnishi seemed to support the high mutation rate, but gave no evidence for synergistic epistasis. Both of these studies, however, were flawed by the lack of suitable controls for assessing viability declines of the mutation-accumulation (MA) lines. By comparing homozygous viability of the MA lines to simultaneously estimated heterozygous viability and using estimates of the dominance of mutations in the experiments, I estimate the viability declines relative to an appropriate control. This approach yields two unexpected conclusions. First, in Ohnishi's experiment as well as in Mukai's, MA lines showed faster-than-linear declines in viability, indicative of synergistic epistasis. Second, while Mukai's estimate of the genomic mutation rate is supported, that from Ohnishi's experiment is an order of magnitude lower. The different results of the experiments most likely resulted from differences in the starting genotypes; even within Mukai's experiment, a subset of MA lines, which I argue probably resulted from a contamination event, showed much slower viability declines than did the majority of lines. Because different genotypes may show very different mutational behavior, only studies using many founding genotypes can determine the average rate and distribution of effects of mutations relevant to natural populations.

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Year:  2004        PMID: 15020469      PMCID: PMC1470720          DOI: 10.1534/genetics.166.2.797

Source DB:  PubMed          Journal:  Genetics        ISSN: 0016-6731            Impact factor:   4.562


  18 in total

1.  Comparative evolutionary genetics of spontaneous mutations affecting fitness in rhabditid nematodes.

Authors:  Charles F Baer; Frank Shaw; Catherine Steding; Margaret Baumgartner; Alicia Hawkins; Andrew Houppert; Nicole Mason; Marissa Reed; Kevin Simonelic; Wayne Woodard; Michael Lynch
Journal:  Proc Natl Acad Sci U S A       Date:  2005-04-04       Impact factor: 11.205

2.  Genomic mutation in lines of Arabidopsis thaliana exposed to ultraviolet-B radiation.

Authors:  Joanna L MacKenzie; Fabienne E Saadé; Quang Hien Le; Thomas E Bureau; Daniel J Schoen
Journal:  Genetics       Date:  2005-07-05       Impact factor: 4.562

3.  Inferences about the distribution of dominance drawn from yeast gene knockout data.

Authors:  Aneil F Agrawal; Michael C Whitlock
Journal:  Genetics       Date:  2010-11-23       Impact factor: 4.562

4.  The dynamics of the roo transposable element in mutation-accumulation lines and segregating populations of Drosophila melanogaster.

Authors:  Montserrat Papaceit; Victoria Avila; Montserrat Aguadé; Aurora García-Dorado
Journal:  Genetics       Date:  2007-09       Impact factor: 4.562

5.  The distribution of fitness effects of new deleterious amino acid mutations in humans.

Authors:  Adam Eyre-Walker; Megan Woolfit; Ted Phelps
Journal:  Genetics       Date:  2006-03-17       Impact factor: 4.562

6.  Increase of the spontaneous mutation rate in a long-term experiment with Drosophila melanogaster.

Authors:  Victoria Avila; David Chavarrías; Enrique Sánchez; Antonio Manrique; Carlos López-Fanjul; Aurora García-Dorado
Journal:  Genetics       Date:  2006-03-17       Impact factor: 4.562

7.  Molecular spectrum of spontaneous de novo mutations in male and female germline cells of Drosophila melanogaster.

Authors:  Yutaka Watanabe; Aya Takahashi; Masanobu Itoh; Toshiyuki Takano-Shimizu
Journal:  Genetics       Date:  2008-12-29       Impact factor: 4.562

Review 8.  Causes of natural variation in fitness: evidence from studies of Drosophila populations.

Authors:  Brian Charlesworth
Journal:  Proc Natl Acad Sci U S A       Date:  2015-01-08       Impact factor: 11.205

9.  A genome-wide view of the spectrum of spontaneous mutations in yeast.

Authors:  Michael Lynch; Way Sung; Krystalynne Morris; Nicole Coffey; Christian R Landry; Erik B Dopman; W Joseph Dickinson; Kazufusa Okamoto; Shilpa Kulkarni; Daniel L Hartl; W Kelley Thomas
Journal:  Proc Natl Acad Sci U S A       Date:  2008-06-26       Impact factor: 11.205

10.  Mutational bias for body size in rhabditid nematodes.

Authors:  Dejerianne Ostrow; Naomi Phillips; Arián Avalos; Dustin Blanton; Ashley Boggs; Thomas Keller; Laura Levy; Jeffrey Rosenbloom; Charles F Baer
Journal:  Genetics       Date:  2007-05-04       Impact factor: 4.562

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