Literature DB >> 14996802

A -1 ribosomal frameshift in the transcript that encodes the major head protein of bacteriophage A2 mediates biosynthesis of a second essential component of the capsid.

Pilar García1, Isabel Rodríguez, Juan E Suárez.   

Abstract

The two major capsid proteins of Lactobacillus bacteriophage A2 share their amino termini. The smaller of these (gp5A) results from translation of orf5 and proteolytic processing after residue 123. The larger form (gp5B) originates through a -1 ribosomal frameshift at the penultimate codon of orf5 mRNA, resulting in a product that is 85 amino acids longer than gp5A. Frameshifting needs two cis-acting elements: a slippery region with the sequence C CCA AAA (0 frame), and a stem-loop that begins 9 nucleotides after the end of the slippery sequence. Mutations introduced in the slippery sequence suppress the frameshift. Similarly, deletion of the second half of the stem-loop results in drastic reduction of frameshifting. Both gp5A and gp5B appear to be essential for phage viability, since lysogens harboring prophages that produce only one or the other protein become lysed upon induction with mitomycin C, though no viable phage progeny are observed.

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Year:  2004        PMID: 14996802      PMCID: PMC355979          DOI: 10.1128/JB.186.6.1714-1719.2004

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  32 in total

1.  RECODE: a database of frameshifting, bypassing and codon redefinition utilized for gene expression.

Authors:  P V Baranov; O L Gurvich; O Fayet; M F Prère; W A Miller; R F Gesteland; J F Atkins; M C Giddings
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

2.  An analysis of sequences stimulating frameshifting in the decoding of gene 10 of bacteriophage T7.

Authors:  B G Condron; R F Gesteland; J F Atkins
Journal:  Nucleic Acids Res       Date:  1991-10-25       Impact factor: 16.971

3.  Molecular analysis of the cos region of the Lactobacillus casei bacteriophage A2. Gene product 3, gp3, specifically binds to its downstream cos region.

Authors:  P García; J C Alonso; J E Suárez
Journal:  Mol Microbiol       Date:  1997-02       Impact factor: 3.501

4.  Nucleotide sequence and complementation studies of the gene 10 region of bacteriophage T3.

Authors:  J P Condreay; S E Wright; I J Molineux
Journal:  J Mol Biol       Date:  1989-06-05       Impact factor: 5.469

Review 5.  Ribosomal frameshifting viral RNAs.

Authors:  I Brierley
Journal:  J Gen Virol       Date:  1995-08       Impact factor: 3.891

6.  rRNA-mRNA base pairing stimulates a programmed -1 ribosomal frameshift.

Authors:  B Larsen; N M Wills; R F Gesteland; J F Atkins
Journal:  J Bacteriol       Date:  1994-11       Impact factor: 3.490

7.  E. coli ribosomes re-phase on retroviral frameshift signals at rates ranging from 2 to 50 percent.

Authors:  R B Weiss; D M Dunn; M Shuh; J F Atkins; R F Gesteland
Journal:  New Biol       Date:  1989-11

8.  Sequence requirements for efficient translational frameshifting in the Escherichia coli dnaX gene and the role of an unstable interaction between tRNA(Lys) and an AAG lysine codon.

Authors:  Z Tsuchihashi; P O Brown
Journal:  Genes Dev       Date:  1992-03       Impact factor: 11.361

9.  Ribosomal pausing at a frameshifter RNA pseudoknot is sensitive to reading phase but shows little correlation with frameshift efficiency.

Authors:  H Kontos; S Napthine; I Brierley
Journal:  Mol Cell Biol       Date:  2001-12       Impact factor: 4.272

10.  Structural probing and mutagenic analysis of the stem-loop required for Escherichia coli dnaX ribosomal frameshifting: programmed efficiency of 50%.

Authors:  B Larsen; R F Gesteland; J F Atkins
Journal:  J Mol Biol       Date:  1997-08-08       Impact factor: 5.469

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  11 in total

1.  A second case of -1 ribosomal frameshifting affecting a major virion protein of the Lactobacillus bacteriophage A2.

Authors:  Isabel Rodríguez; Pilar García; Juan E Suárez
Journal:  J Bacteriol       Date:  2005-12       Impact factor: 3.490

2.  Isolation of new Stenotrophomonas bacteriophages and genomic characterization of temperate phage S1.

Authors:  Pilar García; Cristina Monjardín; Rebeca Martín; Carmen Madera; Nora Soberón; Eva Garcia; Alvaro Meana; Juan E Suárez
Journal:  Appl Environ Microbiol       Date:  2008-10-24       Impact factor: 4.792

3.  Two Phages, phiIPLA-RODI and phiIPLA-C1C, Lyse Mono- and Dual-Species Staphylococcal Biofilms.

Authors:  Diana Gutiérrez; Dieter Vandenheuvel; Beatriz Martínez; Ana Rodríguez; Rob Lavigne; Pilar García
Journal:  Appl Environ Microbiol       Date:  2015-03-06       Impact factor: 4.792

Review 4.  Ribosomal frameshifting and transcriptional slippage: From genetic steganography and cryptography to adventitious use.

Authors:  John F Atkins; Gary Loughran; Pramod R Bhatt; Andrew E Firth; Pavel V Baranov
Journal:  Nucleic Acids Res       Date:  2016-07-19       Impact factor: 16.971

5.  Functional genomic analysis of two Staphylococcus aureus phages isolated from the dairy environment.

Authors:  Pilar García; Beatriz Martínez; José María Obeso; Rob Lavigne; Rudi Lurz; Ana Rodríguez
Journal:  Appl Environ Microbiol       Date:  2009-10-16       Impact factor: 4.792

6.  Genome sequence and characteristics of Lrm1, a prophage from industrial Lactobacillus rhamnosus strain M1.

Authors:  Evelyn Durmaz; Michael J Miller; M Andrea Azcarate-Peril; Stephen P Toon; Todd R Klaenhammer
Journal:  Appl Environ Microbiol       Date:  2008-06-06       Impact factor: 4.792

7.  Exposing the secrets of two well-known Lactobacillus casei phages, J-1 and PL-1, by genomic and structural analysis.

Authors:  Maria Eugenia Dieterle; Charles Bowman; Carlos Batthyany; Esteban Lanzarotti; Adrián Turjanski; Graham Hatfull; Mariana Piuri
Journal:  Appl Environ Microbiol       Date:  2014-09-12       Impact factor: 4.792

8.  Structural proteins of Enterococcus faecalis bacteriophage ϕEf11.

Authors:  Roy H Stevens; Hongming Zhang; Chaiwing Hsiao; Scott Kachlany; Eduardo M B Tinoco; Jessica DePew; Derrick E Fouts
Journal:  Bacteriophage       Date:  2016-11-04

9.  Isolation and characterisation of novel phages infecting Lactobacillus plantarum and proposal of a new genus, "Silenusvirus".

Authors:  Ifigeneia Kyrkou; Alexander Byth Carstens; Lea Ellegaard-Jensen; Witold Kot; Athanasios Zervas; Amaru Miranda Djurhuus; Horst Neve; Charles M A P Franz; Martin Hansen; Lars Hestbjerg Hansen
Journal:  Sci Rep       Date:  2020-05-29       Impact factor: 4.379

10.  Role of the Pre-neck Appendage Protein (Dpo7) from Phage vB_SepiS-phiIPLA7 as an Anti-biofilm Agent in Staphylococcal Species.

Authors:  Diana Gutiérrez; Yves Briers; Lorena Rodríguez-Rubio; Beatriz Martínez; Ana Rodríguez; Rob Lavigne; Pilar García
Journal:  Front Microbiol       Date:  2015-11-25       Impact factor: 5.640

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