Literature DB >> 14991422

Thermococcus marinus sp. nov. and Thermococcus radiotolerans sp. nov., two hyperthermophilic archaea from deep-sea hydrothermal vents that resist ionizing radiation.

Edmond Jolivet1, Erwan Corre, Stéphane L'Haridon, Patrick Forterre, Daniel Prieur.   

Abstract

Enrichments for anaerobic, organotrophic hyperthermophiles were performed with hydrothermal chimney samples collected from the Mid-Atlantic Ridge at a depth of 3,550 m (23 degrees 22'N, 44 degrees 57'W) and the Guaymas Basin (27 degrees 01'N, 111 degrees 24'W) at a depth of 2,616 m. Positive enrichments were submitted to gamma-irradiation at doses of 20 and 30 kGy. Two hyperthermophilic, anaerobic, sulfur-metabolizing archaea were isolated. Strain EJ1T was isolated from chimney samples collected from the Mid-Atlantic Ridge after gamma-irradiation at 20 kGy, and strain EJ2T was isolated from the Guaymas Basin after gamma-irradiation at 30 kGy. Only strain EJ2T was motile, and both formed regular cocci. These new strains grew between 55 and 95 degrees C with the optimal temperature being 88 degrees C. The optimal pH for growth was 6.0, and the optimal NaCl concentration for growth was around 20 g l(-1). These strains were obligate anaerobic heterotrophs that utilized yeast extract, tryptone, and peptone as a carbon source for growth. Ten amino acids were essential for the growth of strain EJ1), such as arginine, aspartic acid, isoleucine, leucine, methionine, phenylalanine, proline, threonine, tyrosine, and valine, while strain EJ2T was unable to grow on a mixture of amino acids. Elemental sulfur or cystine was required for EJ2T growth and was reduced to hydrogen sulfide. Rifampicin inhibited growth for both strains EJ1T and EJ2T. The G + C contents of the genomic DNA were 52.3 and 54.5 mol% for EJ1T and EJ2T, respectively. As determined by 16S rRNA gene sequence analysis, these strains were more closely related to Thermococcus gorgonarius, T. celer, T. guaymasensis, T. profundus, and T. hydrothermalis. However, no significant homology was observed between them with DNA-DNA hybridization. These novel organisms also possess phenotypic traits that differ from those of its closest phylogenetic relatives. Therefore, it is proposed that these isolates, which are amongst the most radioresistant hyperthermophilic archaea known to date with T. gammatolerans (Jolivet et al. 2003a), should be described as novel species T. marinus sp. nov. and T. radiotolerans sp. nov. The type strain of T. marinus is strain EJ1T (= DSM 15227T = JCM 11825T) and the type strain of T. radiotolerans is strain EJ2T (= DSM 15228T = JCM 11826T). Copyright 2004 Springer-Verlag

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Year:  2004        PMID: 14991422     DOI: 10.1007/s00792-004-0380-9

Source DB:  PubMed          Journal:  Extremophiles        ISSN: 1431-0651            Impact factor:   2.395


  31 in total

1.  GenBank.

Authors:  D A Benson; M S Boguski; D J Lipman; J Ostell; B F Ouellette; B A Rapp; D L Wheeler
Journal:  Nucleic Acids Res       Date:  1999-01-01       Impact factor: 16.971

2.  The neighbor-joining method: a new method for reconstructing phylogenetic trees.

Authors:  N Saitou; M Nei
Journal:  Mol Biol Evol       Date:  1987-07       Impact factor: 16.240

3.  Comparison of archaeal and bacterial genomes: computer analysis of protein sequences predicts novel functions and suggests a chimeric origin for the archaea.

Authors:  E V Koonin; A R Mushegian; M Y Galperin; D R Walker
Journal:  Mol Microbiol       Date:  1997-08       Impact factor: 3.501

4.  Thermococcus gorgonarius sp. nov. and Thermococcus pacificus sp. nov.: heterotrophic extremely thermophilic archaea from New Zealand submarine hot vents.

Authors:  M L Miroshnichenko; G M Gongadze; F A Rainey; A S Kostyukova; A M Lysenko; N A Chernyh; E A Bonch-Osmolovskaya
Journal:  Int J Syst Bacteriol       Date:  1998-01

5.  Thermococcus waiotapuensis sp. nov., an extremely thermophilic archaeon isolated from a freshwater hot spring.

Authors:  J M González; D Sheckells; M Viebahn; D Krupatkina; K M Borges; F T Robb
Journal:  Arch Microbiol       Date:  1999-08       Impact factor: 2.552

6.  New approach to the cultivation of methanogenic bacteria: 2-mercaptoethanesulfonic acid (HS-CoM)-dependent growth of Methanobacterium ruminantium in a pressureized atmosphere.

Authors:  W E Balch; R S Wolfe
Journal:  Appl Environ Microbiol       Date:  1976-12       Impact factor: 4.792

7.  Thermococcus barophilus sp. nov., a new barophilic and hyperthermophilic archaeon isolated under high hydrostatic pressure from a deep-sea hydrothermal vent.

Authors:  V T Marteinsson; J L Birrien; A L Reysenbach; M Vernet; D Marie; A Gambacorta; P Messner; U B Sleytr; D Prieur
Journal:  Int J Syst Bacteriol       Date:  1999-04

8.  Physiological responses of the hyperthermophilic archaeon "Pyrococcus abyssi" to DNA damage caused by ionizing radiation.

Authors:  Edmond Jolivet; Fujihiko Matsunaga; Yoshizumi Ishino; Patrick Forterre; Daniel Prieur; Hannu Myllykallio
Journal:  J Bacteriol       Date:  2003-07       Impact factor: 3.490

9.  The Ribosomal Database Project (RDP).

Authors:  B L Maidak; G J Olsen; N Larsen; R Overbeek; M J McCaughey; C R Woese
Journal:  Nucleic Acids Res       Date:  1996-01-01       Impact factor: 16.971

10.  Thermococcus acidaminovorans sp. nov., a new hyperthermophilic alkalophilic archaeon growing on amino acids.

Authors:  R Dirmeier; M Keller; D Hafenbradl; F J Braun; R Rachel; S Burggraf; K O Stetter
Journal:  Extremophiles       Date:  1998-05       Impact factor: 2.395

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  17 in total

1.  Extensive diversity of ionizing-radiation-resistant bacteria recovered from Sonoran Desert soil and description of nine new species of the genus Deinococcus obtained from a single soil sample.

Authors:  Fred A Rainey; Keren Ray; Margarida Ferreira; Bridget Z Gatz; M Fernanda Nobre; Danielle Bagaley; Brian A Rash; Mie-Jung Park; Ashlee M Earl; Nicole C Shank; Alanna M Small; Margaret C Henk; John R Battista; Peter Kämpfer; Milton S da Costa
Journal:  Appl Environ Microbiol       Date:  2005-09       Impact factor: 4.792

Review 2.  Recent developments in the thermophilic microbiology of deep-sea hydrothermal vents.

Authors:  Margarita L Miroshnichenko; Elizaveta A Bonch-Osmolovskaya
Journal:  Extremophiles       Date:  2006-01-18       Impact factor: 2.395

3.  The temperature gradient-forming device, an accessory unit for normal light microscopes to study the biology of hyperthermophilic microorganisms.

Authors:  Maximilian Mora; Annett Bellack; Matthias Ugele; Johann Hopf; Reinhard Wirth
Journal:  Appl Environ Microbiol       Date:  2014-05-23       Impact factor: 4.792

Review 4.  Radiation resistance in thermophiles: mechanisms and applications.

Authors:  Preeti Ranawat; Seema Rawat
Journal:  World J Microbiol Biotechnol       Date:  2017-05-03       Impact factor: 3.312

5.  Physiological responses of the halophilic archaeon Halobacterium sp. strain NRC1 to desiccation and gamma irradiation.

Authors:  Molly Kottemann; Adrienne Kish; Chika Iloanusi; Sarah Bjork; Jocelyne DiRuggiero
Journal:  Extremophiles       Date:  2005-04-21       Impact factor: 2.395

6.  Recovery of ionizing-radiation damage after high doses of gamma ray in the hyperthermophilic archaeon Thermococcus gammatolerans.

Authors:  Angels Tapias; Christophe Leplat; Fabrice Confalonieri
Journal:  Extremophiles       Date:  2009-01-11       Impact factor: 2.395

7.  Characterization of DNA polymerase from the hyperthermophilic archaeon Thermococcus marinus and its application to PCR.

Authors:  Heejin Bae; Kee Pum Kim; Jong Il Lee; Jae-Geun Song; Eui-Joon Kil; Joong Su Kim; Suk-Tae Kwon
Journal:  Extremophiles       Date:  2009-05-03       Impact factor: 2.395

8.  Thermococcus bergensis sp. nov., a Novel Hyperthermophilic Starch-Degrading Archaeon.

Authors:  Nils-Kåre Birkeland; Boyke Bunk; Cathrin Spröer; Hans-Peter Klenk; Peter Schönheit
Journal:  Biology (Basel)       Date:  2021-04-29

9.  Adaptations to submarine hydrothermal environments exemplified by the genome of Nautilia profundicola.

Authors:  Barbara J Campbell; Julie L Smith; Thomas E Hanson; Martin G Klotz; Lisa Y Stein; Charles K Lee; Dongying Wu; Jeffrey M Robinson; Hoda M Khouri; Jonathan A Eisen; S Craig Cary
Journal:  PLoS Genet       Date:  2009-02-06       Impact factor: 5.917

10.  Genome analysis and genome-wide proteomics of Thermococcus gammatolerans, the most radioresistant organism known amongst the Archaea.

Authors:  Yvan Zivanovic; Jean Armengaud; Arnaud Lagorce; Christophe Leplat; Philippe Guérin; Murielle Dutertre; Véronique Anthouard; Patrick Forterre; Patrick Wincker; Fabrice Confalonieri
Journal:  Genome Biol       Date:  2009-06-26       Impact factor: 13.583

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