Literature DB >> 16634635

Conformational states and dynamics of rhodopsin in micelles and bilayers.

Ana Karin Kusnetzow1, Christian Altenbach, Wayne L Hubbell.   

Abstract

Nitroxide sensors were placed in rhodopsin at sites 140, 227, 250, and 316 to monitor the dynamics and conformation of the receptor at the cytoplasmic surface in solutions of dodecyl maltoside (DM), digitonin, and phospholipid bilayers of two compositions. The EPR spectra reveal a remarkable similarity of rhodopsin structure and the activating conformational change in DM and bilayers, the hallmark of which is an outward tilt of transmembrane helix VI. This conformational change is blocked in solutions of digitonin, although changes in optical absorbance accompany activation, showing that absorbance and structural changes are not necessarily coupled. In DM and bilayers, the receptor is apparently in equilibrium between conformational substates whose populations are modulated by activation. Despite the general similarity in the two environments, the receptor conformations have increased flexibility in DM relative to bilayers. For the activated receptor in DM and bilayers, a pH-dependent conformational equilibrium is identified that may correspond to the optically characterized MII(a)()-MII(b)() equilibrium. No specific effects of headgroup composition on receptor conformation in lipid bilayers were found.

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Year:  2006        PMID: 16634635      PMCID: PMC2739654          DOI: 10.1021/bi060101v

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  76 in total

1.  Conformations of the active and inactive states of opsin.

Authors:  R Vogel; F Siebert
Journal:  J Biol Chem       Date:  2001-08-13       Impact factor: 5.157

2.  Functional role of internal water molecules in rhodopsin revealed by X-ray crystallography.

Authors:  Tetsuji Okada; Yoshinori Fujiyoshi; Maria Silow; Javier Navarro; Ehud M Landau; Yoshinori Shichida
Journal:  Proc Natl Acad Sci U S A       Date:  2002-04-23       Impact factor: 11.205

Review 3.  Advances in determination of a high-resolution three-dimensional structure of rhodopsin, a model of G-protein-coupled receptors (GPCRs).

Authors:  D C Teller; T Okada; C A Behnke; K Palczewski; R E Stenkamp
Journal:  Biochemistry       Date:  2001-07-03       Impact factor: 3.162

Review 4.  A new spin on protein dynamics.

Authors:  Linda Columbus; Wayne L Hubbell
Journal:  Trends Biochem Sci       Date:  2002-06       Impact factor: 13.807

5.  Molecular motion of spin labeled side chains in alpha-helices: analysis by variation of side chain structure.

Authors:  L Columbus; T Kálai; J Jekö; K Hideg; W L Hubbell
Journal:  Biochemistry       Date:  2001-04-03       Impact factor: 3.162

6.  Expression of a synthetic bovine rhodopsin gene in monkey kidney cells.

Authors:  D D Oprian; R S Molday; R J Kaufman; H G Khorana
Journal:  Proc Natl Acad Sci U S A       Date:  1987-12       Impact factor: 11.205

7.  Conformational energetics of rhodopsin modulated by nonlamellar-forming lipids.

Authors:  Ana Vitória Botelho; Nicholas J Gibson; Robin L Thurmond; Yin Wang; Michael F Brown
Journal:  Biochemistry       Date:  2002-05-21       Impact factor: 3.162

8.  Structure and function in rhodopsin: asymmetric reconstitution of rhodopsin in liposomes.

Authors:  Li Niu; Jong-Myoung Kim; H Gobind Khorana
Journal:  Proc Natl Acad Sci U S A       Date:  2002-10-07       Impact factor: 11.205

9.  Mechanisms of membrane protein insertion into liposomes during reconstitution procedures involving the use of detergents. 1. Solubilization of large unilamellar liposomes (prepared by reverse-phase evaporation) by triton X-100, octyl glucoside, and sodium cholate.

Authors:  M T Paternostre; M Roux; J L Rigaud
Journal:  Biochemistry       Date:  1988-04-19       Impact factor: 3.162

10.  Evidence that helix 8 of rhodopsin acts as a membrane-dependent conformational switch.

Authors:  A Gopala Krishna; Santosh T Menon; Tracy J Terry; Thomas P Sakmar
Journal:  Biochemistry       Date:  2002-07-02       Impact factor: 3.162

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  46 in total

1.  High-pressure EPR reveals conformational equilibria and volumetric properties of spin-labeled proteins.

Authors:  John McCoy; Wayne L Hubbell
Journal:  Proc Natl Acad Sci U S A       Date:  2011-01-04       Impact factor: 11.205

2.  Structure and function of the visual arrestin oligomer.

Authors:  Susan M Hanson; Ned Van Eps; Derek J Francis; Christian Altenbach; Sergey A Vishnivetskiy; Vadim Y Arshavsky; Candice S Klug; Wayne L Hubbell; Vsevolod V Gurevich
Journal:  EMBO J       Date:  2007-03-01       Impact factor: 11.598

3.  Structural determinants of nitroxide motion in spin-labeled proteins: solvent-exposed sites in helix B of T4 lysozyme.

Authors:  Zhefeng Guo; Duilio Cascio; Kálmán Hideg; Wayne L Hubbell
Journal:  Protein Sci       Date:  2007-12-20       Impact factor: 6.725

4.  Structural determinants of nitroxide motion in spin-labeled proteins: tertiary contact and solvent-inaccessible sites in helix G of T4 lysozyme.

Authors:  Zhefeng Guo; Duilio Cascio; Kálmán Hideg; Támás Kálái; Wayne L Hubbell
Journal:  Protein Sci       Date:  2007-05-01       Impact factor: 6.725

5.  Mapping allosteric connections from the receptor to the nucleotide-binding pocket of heterotrimeric G proteins.

Authors:  William M Oldham; Ned Van Eps; Anita M Preininger; Wayne L Hubbell; Heidi E Hamm
Journal:  Proc Natl Acad Sci U S A       Date:  2007-04-26       Impact factor: 11.205

6.  Sequence of late molecular events in the activation of rhodopsin.

Authors:  Bernhard Knierim; Klaus Peter Hofmann; Oliver P Ernst; Wayne L Hubbell
Journal:  Proc Natl Acad Sci U S A       Date:  2007-12-11       Impact factor: 11.205

7.  Structural origin of weakly ordered nitroxide motion in spin-labeled proteins.

Authors:  Mark R Fleissner; Duilio Cascio; Wayne L Hubbell
Journal:  Protein Sci       Date:  2009-05       Impact factor: 6.725

8.  Role of detergents in conformational exchange of a G protein-coupled receptor.

Authors:  Ka Young Chung; Tae Hun Kim; Aashish Manglik; Rohan Alvares; Brian K Kobilka; R Scott Prosser
Journal:  J Biol Chem       Date:  2012-08-14       Impact factor: 5.157

9.  Location of the retinal chromophore in the activated state of rhodopsin*.

Authors:  Shivani Ahuja; Evan Crocker; Markus Eilers; Viktor Hornak; Amiram Hirshfeld; Martine Ziliox; Natalie Syrett; Philip J Reeves; H Gobind Khorana; Mordechai Sheves; Steven O Smith
Journal:  J Biol Chem       Date:  2009-01-28       Impact factor: 5.157

10.  Co-evolving stability and conformational homogeneity of the human adenosine A2a receptor.

Authors:  Francesca Magnani; Yoko Shibata; Maria J Serrano-Vega; Christopher G Tate
Journal:  Proc Natl Acad Sci U S A       Date:  2008-07-29       Impact factor: 11.205

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