Literature DB >> 14971957

Dynamic nature of the intramolecular electronic coupling mediated by a solvent molecule: a computational study.

Alessandro Troisi1, Mark A Ratner, Matthew B Zimmt.   

Abstract

We present a combined Molecular Dynamics/Quantum Chemical study of the solvent-mediated electronic coupling between an electron donor and acceptor in a C-clamp molecule. We characterize the coupling fluctuations due to the solvent motion for different solvents (acetonitrile, benzene, 1,3-diisopropyl-benzene) for the charge separation and the charge recombination processes. The time scale for solvent-induced coupling fluctuation is approximately 0.1 ps. The effect of these fluctuations on the observed rate is discussed using a recently developed theoretical model. We show that, while the microscopic charge transfer process is very complicated and its computational modeling very subtle, the macroscopic phenomenology can be captured by the standard models. Analyzing the contribution to the coupling given by different solvent orbitals, we find that many solvent orbitals mediate the electron transfer and that paths through different solvent orbitals can interfere constructively or destructively. A relatively small subset of substrate-solvent configurations dominate contributions to solvent-mediated coupling. This subset of configurations is related to the electronic structure of the C-clamp molecule.

Entities:  

Year:  2004        PMID: 14971957     DOI: 10.1021/ja038905a

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  9 in total

1.  Protein dynamics and electron transfer: electronic decoherence and non-Condon effects.

Authors:  Spiros S Skourtis; Ilya A Balabin; Tsutomu Kawatsu; David N Beratan
Journal:  Proc Natl Acad Sci U S A       Date:  2005-02-28       Impact factor: 11.205

2.  Photoselected electron transfer pathways in DNA photolyase.

Authors:  Tatiana R Prytkova; David N Beratan; Spiros S Skourtis
Journal:  Proc Natl Acad Sci U S A       Date:  2007-01-05       Impact factor: 11.205

Review 3.  Fluctuations in biological and bioinspired electron-transfer reactions.

Authors:  Spiros S Skourtis; David H Waldeck; David N Beratan
Journal:  Annu Rev Phys Chem       Date:  2010       Impact factor: 12.703

4.  A single solvating benzene molecule decouples the mixed-valence complex through intermolecular orbital interactions.

Authors:  Suman Mallick; Yuli Zhou; Xiaoli Chen; Ying Ning Tan; Miao Meng; Lijiu Cao; Yi Qin; Zi Cong He; Tao Cheng; Guang Yuan Zhu; Chun Y Liu
Journal:  iScience       Date:  2022-05-06

5.  Experimental evidence for water mediated electron transfer through bis-amino acid donor-bridge-acceptor oligomers.

Authors:  Subhasis Chakrabarti; Matthew F L Parker; Christopher W Morgan; Christian E Schafmeister; David H Waldeck
Journal:  J Am Chem Soc       Date:  2009-02-18       Impact factor: 15.419

Review 6.  Steering electrons on moving pathways.

Authors:  David N Beratan; Spiros S Skourtis; Ilya A Balabin; Alexander Balaeff; Shahar Keinan; Ravindra Venkatramani; Dequan Xiao
Journal:  Acc Chem Res       Date:  2009-10-20       Impact factor: 22.384

7.  Discrimination of class I cyclobutane pyrimidine dimer photolyase from blue light photoreceptors by single methionine residue.

Authors:  Yuji Miyazawa; Hirotaka Nishioka; Kei Yura; Takahisa Yamato
Journal:  Biophys J       Date:  2007-11-30       Impact factor: 4.033

8.  Electron tunneling through sensitizer wires bound to proteins.

Authors:  Matthew R Hartings; Igor V Kurnikov; Alexander R Dunn; Jay R Winkler; Harry B Gray; Mark A Ratner
Journal:  Coord Chem Rev       Date:  2010-02-01       Impact factor: 22.315

9.  How mobile are dye adsorbates and acetonitrile molecules on the surface of TiO2 nanoparticles? A quasi-elastic neutron scattering study.

Authors:  Valerie Vaissier; Victoria Garcia Sakai; Xiaoe Li; João T Cabral; Jenny Nelson; Piers R F Barnes
Journal:  Sci Rep       Date:  2016-12-19       Impact factor: 4.379

  9 in total

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