Literature DB >> 14872129

Quantitation of rapid proton-deuteron amide exchange using hadamard spectroscopy.

Catherine Bougault1, Lianmei Feng, John Glushka, Eriks Kupce, J H Prestegard.   

Abstract

The rates of amide proton exchange in protein backbones are very useful reporters of accessibility and structural stability of specific residues and secondary structure elements. Measurement by monitoring changes in intensity of cross-peaks in standard (15)N-(1)H HSQC spectra as protons are replaced by solvent deuterons has become widely accepted. However, these methods are limited to relatively slow rates due to time limitations of the conventional 2D HSQC experiment. Here we show that a Hadamard encoded version of the HSQC, which relies on a multiplexed, frequency selective, excitation in the (15)N dimension, extends application to rates that are as much as an order of magnitude faster than those previously accessible.

Entities:  

Mesh:

Substances:

Year:  2004        PMID: 14872129     DOI: 10.1023/B:JNMR.0000015406.66725.30

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  14 in total

Review 1.  Protein folding intermediates and pathways studied by hydrogen exchange.

Authors:  S W Englander
Journal:  Annu Rev Biophys Biomol Struct       Date:  2000

2.  Fast multi-dimensional NMR of proteins.

Authors:  Eriks Kupce; Ray Freeman
Journal:  J Biomol NMR       Date:  2003-04       Impact factor: 2.835

3.  Fast multi-dimensional Hadamard spectroscopy.

Authors:  Eriks Kupce; Ray Freeman
Journal:  J Magn Reson       Date:  2003-07       Impact factor: 2.229

4.  New methods for fast multidimensional NMR.

Authors:  Ray Freeman; Eriks Kupce
Journal:  J Biomol NMR       Date:  2003-10       Impact factor: 2.835

5.  MOLMOL: a program for display and analysis of macromolecular structures.

Authors:  R Koradi; M Billeter; K Wüthrich
Journal:  J Mol Graph       Date:  1996-02

6.  Observation of hydrogen-deuterium exchange of ubiquitin by direct analysis of electrospray capillary-skimmer dissociation with Fourier transform ion cyclotron resonance mass spectrometry.

Authors:  S Akashi; Y Naito; K Takio
Journal:  Anal Chem       Date:  1999-11-01       Impact factor: 6.986

7.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

8.  Solvent accessibility of the thrombin-thrombomodulin interface.

Authors:  J G Mandell; A Baerga-Ortiz; S Akashi; K Takio; E A Komives
Journal:  J Mol Biol       Date:  2001-02-23       Impact factor: 5.469

9.  Hydrogen exchange in native and alcohol forms of ubiquitin.

Authors:  Y Pan; M S Briggs
Journal:  Biochemistry       Date:  1992-11-24       Impact factor: 3.162

10.  Primary structure effects on peptide group hydrogen exchange.

Authors:  Y Bai; J S Milne; L Mayne; S W Englander
Journal:  Proteins       Date:  1993-09
View more
  11 in total

1.  Analysis of Flexibility of Proteins by means of Positive and Negative Ion MALDI In-Source Decay Mass Spectrometry.

Authors:  Ryunosuke Iimuro; Mitsuo Takayama
Journal:  Mass Spectrom (Tokyo)       Date:  2014-02-01

2.  Protein folding and unfolding studied at atomic resolution by fast two-dimensional NMR spectroscopy.

Authors:  Paul Schanda; Vincent Forge; Bernhard Brutscher
Journal:  Proc Natl Acad Sci U S A       Date:  2007-06-25       Impact factor: 11.205

3.  NMR resonance assignments for sparsely 15N labeled proteins.

Authors:  Lianmei Feng; Han-Seung Lee; James H Prestegard
Journal:  J Biomol NMR       Date:  2007-05-09       Impact factor: 2.835

4.  An improved ultrafast 2D NMR experiment: towards atom-resolved real-time studies of protein kinetics at multi-Hz rates.

Authors:  Maayan Gal; Thomas Kern; Paul Schanda; Lucio Frydman; Bernhard Brutscher
Journal:  J Biomol NMR       Date:  2008-11-04       Impact factor: 2.835

5.  Conformer-specific characterization of nonnative protein states using hydrogen exchange and top-down mass spectrometry.

Authors:  Guanbo Wang; Rinat R Abzalimov; Cedric E Bobst; Igor A Kaltashov
Journal:  Proc Natl Acad Sci U S A       Date:  2013-11-25       Impact factor: 11.205

6.  Changing the Apoptosis Pathway through Evolutionary Protein Design.

Authors:  David Shultis; Pralay Mitra; Xiaoqiang Huang; Jarrett Johnson; Naureen Aslam Khattak; Felicia Gray; Clint Piper; Jeff Czajka; Logan Hansen; Bingbing Wan; Krishnapriya Chinnaswamy; Liu Liu; Mi Wang; Jingxi Pan; Jeanne Stuckey; Tomasz Cierpicki; Christoph H Borchers; Shaomeng Wang; Ming Lei; Yang Zhang
Journal:  J Mol Biol       Date:  2019-01-06       Impact factor: 5.469

7.  Real-time HD Exchange Kinetics of Proteins from Buffered Aqueous Solution with Electrothermal Supercharging and Top-Down Tandem Mass Spectrometry.

Authors:  Catherine C Going; Zijie Xia; Evan R Williams
Journal:  J Am Soc Mass Spectrom       Date:  2016-02-26       Impact factor: 3.109

8.  Prediction of native-state hydrogen exchange from perfectly funneled energy landscapes.

Authors:  Patricio O Craig; Joachim Lätzer; Patrick Weinkam; Ryan M B Hoffman; Diego U Ferreiro; Elizabeth A Komives; Peter G Wolynes
Journal:  J Am Chem Soc       Date:  2011-10-06       Impact factor: 15.419

9.  Real-time hydrogen/deuterium exchange kinetics via supercharged electrospray ionization tandem mass spectrometry.

Authors:  Harry J Sterling; Evan R Williams
Journal:  Anal Chem       Date:  2010-10-13       Impact factor: 6.986

10.  Time-resolved multidimensional NMR with non-uniform sampling.

Authors:  Maxim Mayzel; Joakim Rosenlöw; Linnéa Isaksson; Vladislav Y Orekhov
Journal:  J Biomol NMR       Date:  2014-01-17       Impact factor: 2.835

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.