Literature DB >> 14872062

Physical and functional interaction of the archaeal single-stranded DNA-binding protein SSB with RNA polymerase.

Derek J Richard1, Stephen D Bell, Malcolm F White.   

Abstract

Archaeal transcription utilizes a complex multisubunit RNA polymerase and the basal transcription factors TBP and TF(II)B, closely resembling its eukaryal counterpart. We have uncovered a tight physical and functional interaction between RNA polymerase and the single-stranded DNA-binding protein SSB in Sulfolobus solfataricus. SSB stimulates transcription from promoters in vitro under TBP-limiting conditions and supports transcription in the absence of TBP. SSB also rescues transcription from repression by reconstituted chromatin. We demonstrate the potential for promoter melting by SSB, suggesting a plausible basis for the stimulation of transcription. This stimulation requires both the single-stranded DNA-binding domain and the acidic C-terminal tail of the SSB. The tail forms a stable interaction with RNA polymerase. These data reveal an unexpected role for single-stranded DNA-binding proteins in transcription in archaea.

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Year:  2004        PMID: 14872062      PMCID: PMC373395          DOI: 10.1093/nar/gkh259

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  44 in total

1.  Orientation of the transcription preinitiation complex in archaea.

Authors:  S D Bell; P L Kosa; P B Sigler; S P Jackson
Journal:  Proc Natl Acad Sci U S A       Date:  1999-11-23       Impact factor: 11.205

Review 2.  Structure and functional relationships of archaeal and eukaryal histones and nucleosomes.

Authors:  K Sandman; J N Reeve
Journal:  Arch Microbiol       Date:  2000-03       Impact factor: 2.552

3.  The role of transcription factor B in transcription initiation and promoter clearance in the archaeon Sulfolobus acidocaldarius.

Authors:  S D Bell; S P Jackson
Journal:  J Biol Chem       Date:  2000-04-28       Impact factor: 5.157

Review 4.  Basal and regulated transcription in Archaea.

Authors:  S D Bell; C P Magill; S P Jackson
Journal:  Biochem Soc Trans       Date:  2001-08       Impact factor: 5.407

5.  Preparation of components of archaeal transcription preinitiation complex.

Authors:  Y Korkhin; O Littlefield; P J Nelson; S D Bell; P B Sigler
Journal:  Methods Enzymol       Date:  2001       Impact factor: 1.600

6.  The orientation of DNA in an archaeal transcription initiation complex.

Authors:  M S Bartlett; M Thomm; E P Geiduschek
Journal:  Nat Struct Biol       Date:  2000-09

7.  The archaeal TFIIEalpha homologue facilitates transcription initiation by enhancing TATA-box recognition.

Authors:  S D Bell; A B Brinkman; J van der Oost; S P Jackson
Journal:  EMBO Rep       Date:  2001-02       Impact factor: 8.807

8.  Interaction of E. coli single-stranded DNA binding protein (SSB) with exonuclease I. The carboxy-terminus of SSB is the recognition site for the nuclease.

Authors:  J Genschel; U Curth; C Urbanke
Journal:  Biol Chem       Date:  2000-03       Impact factor: 3.915

Review 9.  Adaptations of the archaeal cell membrane to heat stress.

Authors:  S V Albers; J L van de Vossenberg; A J Driessen; W N Konings
Journal:  Front Biosci       Date:  2000-09-01

10.  Identification and properties of the crenarchaeal single-stranded DNA binding protein from Sulfolobus solfataricus.

Authors:  R I Wadsworth; M F White
Journal:  Nucleic Acids Res       Date:  2001-02-15       Impact factor: 16.971

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  23 in total

Review 1.  DNA replication in the archaea.

Authors:  Elizabeth R Barry; Stephen D Bell
Journal:  Microbiol Mol Biol Rev       Date:  2006-12       Impact factor: 11.056

2.  SSB antagonizes RecX-RecA interaction.

Authors:  Dmitry M Baitin; Marielle C Gruenig; Michael M Cox
Journal:  J Biol Chem       Date:  2008-04-01       Impact factor: 5.157

3.  The Essential, Ubiquitous Single-Stranded DNA-Binding Proteins.

Authors:  Marcos T Oliveira; Grzegorz L Ciesielski
Journal:  Methods Mol Biol       Date:  2021

4.  Single-Stranded DNA-Binding Proteins in the Archaea.

Authors:  Najwa Taib; Simonetta Gribaldo; Stuart A MacNeill
Journal:  Methods Mol Biol       Date:  2021

5.  Stimulation of Escherichia coli DNA damage inducible DNA helicase DinG by the single-stranded DNA binding protein SSB.

Authors:  Zishuo Cheng; Aimee Caillet; Binbin Ren; Huangen Ding
Journal:  FEBS Lett       Date:  2012-10-01       Impact factor: 4.124

6.  Binding dynamics of a monomeric SSB protein to DNA: a single-molecule multi-process approach.

Authors:  Michael J Morten; Jose R Peregrina; Maria Figueira-Gonzalez; Katrin Ackermann; Bela E Bode; Malcolm F White; J Carlos Penedo
Journal:  Nucleic Acids Res       Date:  2015-11-17       Impact factor: 16.971

7.  Development of a novel one-tube isothermal reverse transcription thermophilic helicase-dependent amplification platform for rapid RNA detection.

Authors:  James Goldmeyer; Huimin Kong; Wen Tang
Journal:  J Mol Diagn       Date:  2007-11       Impact factor: 5.568

8.  Protein-coding gene promoters in Methanocaldococcus (Methanococcus) jannaschii.

Authors:  Jian Zhang; Enhu Li; Gary J Olsen
Journal:  Nucleic Acids Res       Date:  2009-04-09       Impact factor: 16.971

9.  Inhibition of translesion DNA polymerase by archaeal reverse gyrase.

Authors:  Anna Valenti; Giuseppe Perugino; Takehiko Nohmi; Mosè Rossi; Maria Ciaramella
Journal:  Nucleic Acids Res       Date:  2009-05-14       Impact factor: 16.971

10.  The helicase XPD unwinds bubble structures and is not stalled by DNA lesions removed by the nucleotide excision repair pathway.

Authors:  Jana Rudolf; Christophe Rouillon; Ulrich Schwarz-Linek; Malcolm F White
Journal:  Nucleic Acids Res       Date:  2009-11-20       Impact factor: 16.971

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