Literature DB >> 20858409

Nonessential sites improve phosphorylation switch.

Liming Wang, Qing Nie, German Enciso.   

Abstract

Multisite phosphorylation is a common form of posttranslational protein regulation which has been used to increase the switchlike behavior of the protein response to increasing kinase concentrations. In this letter, we show that the switchlike response of multisite phosphoproteins is strongly enhanced by nonessential phosphorylation sites, a mechanism that is robust to parameter changes and easily implemented in nature. We obtained analytic estimates for the Hill exponent (or coefficient) of the switchlike response, and we observed that a tradeoff exists between the switch and the kinase threshold for activation. This also suggests a possible evolutionary mechanism for the relatively large numbers of phosphorylation sites found in various proteins.
Copyright © 2010 Biophysical Society. Published by Elsevier Inc. All rights reserved.

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Year:  2010        PMID: 20858409      PMCID: PMC2941022          DOI: 10.1016/j.bpj.2010.07.030

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  17 in total

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2.  Detection of multistability, bifurcations, and hysteresis in a large class of biological positive-feedback systems.

Authors:  David Angeli; James E Ferrell; Eduardo D Sontag
Journal:  Proc Natl Acad Sci U S A       Date:  2004-02-06       Impact factor: 11.205

3.  A combination of multisite phosphorylation and substrate sequestration produces switchlike responses.

Authors:  Xinfeng Liu; Lee Bardwell; Qing Nie
Journal:  Biophys J       Date:  2010-04-21       Impact factor: 4.033

4.  Multisite protein phosphorylation makes a good threshold but can be a poor switch.

Authors:  Jeremy Gunawardena
Journal:  Proc Natl Acad Sci U S A       Date:  2005-09-29       Impact factor: 11.205

5.  An entropic mechanism to generate highly cooperative and specific binding from protein phosphorylations.

Authors:  Peter Lenz; Peter S Swain
Journal:  Curr Biol       Date:  2006-11-07       Impact factor: 10.834

6.  Tuning bulk electrostatics to regulate protein function.

Authors:  Zach Serber; James E Ferrell
Journal:  Cell       Date:  2007-02-09       Impact factor: 41.582

7.  Temporal cooperativity and sensitivity amplification in biological signal transduction.

Authors:  Hong Qian; Jonathan A Cooper
Journal:  Biochemistry       Date:  2008-01-15       Impact factor: 3.162

8.  Autophosphorylation of FGFR1 kinase is mediated by a sequential and precisely ordered reaction.

Authors:  Cristina M Furdui; Erin D Lew; Joseph Schlessinger; Karen S Anderson
Journal:  Mol Cell       Date:  2006-03-03       Impact factor: 17.970

9.  A mechanism for cell-cycle regulation of MAP kinase signaling in a yeast differentiation pathway.

Authors:  Shelly C Strickfaden; Matthew J Winters; Giora Ben-Ari; Rachel E Lamson; Mike Tyers; Peter M Pryciak
Journal:  Cell       Date:  2007-02-09       Impact factor: 41.582

Review 10.  Bistability by multiple phosphorylation of regulatory proteins.

Authors:  Orsolya Kapuy; Debashis Barik; Maria Rosa Domingo Sananes; John J Tyson; Béla Novák
Journal:  Prog Biophys Mol Biol       Date:  2009-06-11       Impact factor: 3.667

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  22 in total

1.  The Prozone Effect Accounts for the Paradoxical Function of the Cdk-Binding Protein Suc1/Cks.

Authors:  Sang Hoon Ha; Sun Young Kim; James E Ferrell
Journal:  Cell Rep       Date:  2016-02-04       Impact factor: 9.423

2.  Ultrasensitivity in independent multisite systems.

Authors:  Shane Ryerson; Germán A Enciso
Journal:  J Math Biol       Date:  2013-09-18       Impact factor: 2.259

3.  Site-specific NMR mapping and time-resolved monitoring of serine and threonine phosphorylation in reconstituted kinase reactions and mammalian cell extracts.

Authors:  Francois-Xavier Theillet; Honor May Rose; Stamatios Liokatis; Andres Binolfi; Rossukon Thongwichian; Marchel Stuiver; Philipp Selenko
Journal:  Nat Protoc       Date:  2013-06-27       Impact factor: 13.491

4.  Protein scaffolds can enhance the bistability of multisite phosphorylation systems.

Authors:  Carlo Chan; Xinfeng Liu; Liming Wang; Lee Bardwell; Qing Nie; Germán Enciso
Journal:  PLoS Comput Biol       Date:  2012-06-21       Impact factor: 4.475

5.  Enhancement of tunability of MAPK cascade due to coexistence of processive and distributive phosphorylation mechanisms.

Authors:  Jianqiang Sun; Ming Yi; Lijian Yang; Wenbin Wei; Yiming Ding; Ya Jia
Journal:  Biophys J       Date:  2014-03-04       Impact factor: 4.033

Review 6.  Physicochemical properties of cells and their effects on intrinsically disordered proteins (IDPs).

Authors:  Francois-Xavier Theillet; Andres Binolfi; Tamara Frembgen-Kesner; Karan Hingorani; Mohona Sarkar; Ciara Kyne; Conggang Li; Peter B Crowley; Lila Gierasch; Gary J Pielak; Adrian H Elcock; Anne Gershenson; Philipp Selenko
Journal:  Chem Rev       Date:  2014-06-05       Impact factor: 60.622

7.  The effect of site-to-site variability in ultrasensitive dose responses.

Authors:  German A Enciso; Shane Ryerson
Journal:  J Math Biol       Date:  2016-04-26       Impact factor: 2.259

Review 8.  Ultrasensitivity part II: multisite phosphorylation, stoichiometric inhibitors, and positive feedback.

Authors:  James E Ferrell; Sang Hoon Ha
Journal:  Trends Biochem Sci       Date:  2014-10-23       Impact factor: 13.807

9.  Tandem phosphorylation within an intrinsically disordered region regulates ACTN4 function.

Authors:  Timothy Travers; Hanshuang Shao; Brian A Joughin; Douglas A Lauffenburger; Alan Wells; Carlos J Camacho
Journal:  Sci Signal       Date:  2015-05-26       Impact factor: 8.192

10.  Ultrasensitivity in multisite phosphorylation of membrane-anchored proteins.

Authors:  Omer Dushek; P Anton van der Merwe; Vahid Shahrezaei
Journal:  Biophys J       Date:  2011-03-02       Impact factor: 4.033

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