Literature DB >> 14766883

IS6110-mediated deletion polymorphism in isogenic strains of Mycobacterium tuberculosis.

S L Sampson1, M Richardson, P D Van Helden, R M Warren.   

Abstract

Previous studies have described IS6110-mediated polymorphism as an important driving force in Mycobacterium tuberculosis genome evolution and have provided indirect evidence for IS6110-driven deletion events. This study provides the first description of an IS6110-mediated deletion event in truly isogenic strains. We also provide further support for the hypothesis that the region from Rv1754 to Rv1765 is a hot spot for IS6110 insertion and deletion events.

Entities:  

Mesh：

Substances：

Year:  2004        PMID： 14766883      PMCID： PMC344511          DOI： 10.1128/JCM.42.2.895-898.2004

Source DB:  PubMed          Journal:  J Clin Microbiol        ISSN： 0095-1137            Impact factor:   5.948


  18 in total

1.  Demonstration of reinfection and reactivation in HIV-negative autopsied cases of secondary tuberculosis: multilesional genotyping of Mycobacterium tuberculosis utilizing IS 6110 and other repetitive element-based DNA fingerprinting.

Authors:  D G du Plessis; R Warren; M Richardson; J J Joubert; P D van Helden
Journal:  Tuberculosis (Edinb)       Date:  2001       Impact factor: 3.131

2.  Insertion element IS987 from Mycobacterium bovis BCG is located in a hot-spot integration region for insertion elements in Mycobacterium tuberculosis complex strains.

Authors:  P W Hermans; D van Soolingen; E M Bik; P E de Haas; J W Dale; J D van Embden
Journal:  Infect Immun       Date:  1991-08       Impact factor: 3.441

3.  Strain identification of Mycobacterium tuberculosis by DNA fingerprinting: recommendations for a standardized methodology.

Authors:  J D van Embden; M D Cave; J T Crawford; J W Dale; K D Eisenach; B Gicquel; P Hermans; C Martin; R McAdam; T M Shinnick
Journal:  J Clin Microbiol       Date:  1993-02       Impact factor: 5.948

4.  IS6110-mediated deletion polymorphism in the direct repeat region of clinical isolates of Mycobacterium tuberculosis.

Authors:  S L Sampson; R M Warren; M Richardson; T C Victor; A M Jordaan; G D van der Spuy; P D van Helden
Journal:  J Bacteriol       Date:  2003-05       Impact factor: 3.490

5.  Comparative genomics of BCG vaccines by whole-genome DNA microarray.

Authors:  M A Behr; M A Wilson; W P Gill; H Salamon; G K Schoolnik; S Rane; P M Small
Journal:  Science       Date:  1999-05-28       Impact factor: 47.728

6.  Microevolution of the direct repeat region of Mycobacterium tuberculosis: implications for interpretation of spoligotyping data.

Authors:  R M Warren; E M Streicher; S L Sampson; G D van der Spuy; M Richardson; D Nguyen; M A Behr; T C Victor; P D van Helden
Journal:  J Clin Microbiol       Date:  2002-12       Impact factor: 5.948

7.  Molecular evolution of Mycobacterium tuberculosis: phylogenetic reconstruction of clonal expansion.

Authors:  R M Warren; M Richardson; S L Sampson; G D van der Spuy; W Bourn; J H Hauman; H Heersma; W Hide; N Beyers; P D van Helden
Journal:  Tuberculosis (Edinb)       Date:  2001       Impact factor: 3.131

8.  Whole-genome comparison of Mycobacterium tuberculosis clinical and laboratory strains.

Authors:  R D Fleischmann; D Alland; J A Eisen; L Carpenter; O White; J Peterson; R DeBoy; R Dodson; M Gwinn; D Haft; E Hickey; J F Kolonay; W C Nelson; L A Umayam; M Ermolaeva; S L Salzberg; A Delcher; T Utterback; J Weidman; H Khouri; J Gill; A Mikula; W Bishai; W R Jacobs; J C Venter; C M Fraser
Journal:  J Bacteriol       Date:  2002-10       Impact factor: 3.490

9.  Genomic analysis reveals variation between Mycobacterium tuberculosis H37Rv and the attenuated M. tuberculosis H37Ra strain.

Authors:  R Brosch; W J Philipp; E Stavropoulos; M J Colston; S T Cole; S V Gordon
Journal:  Infect Immun       Date:  1999-11       Impact factor: 3.441

10.  Comparison of Mycobacterium tuberculosis genomes reveals frequent deletions in a 20 kb variable region in clinical isolates.

Authors:  T B Ho; B D Robertson; G M Taylor; R J Shaw; D B Young
Journal:  Yeast       Date:  2000-12       Impact factor: 3.239
View more
  11 in total

1.  Progression toward an improved DNA amplification-based typing technique in the study of Mycobacterium tuberculosis epidemiology.

Authors:  Krishna K Gopaul; Timothy J Brown; Andrea L Gibson; Malcolm D Yates; Francis A Drobniewski
Journal:  J Clin Microbiol       Date:  2006-07       Impact factor: 5.948

Review 2.  Transposition mechanism, molecular characterization and evolution of IS6110, the specific evolutionary marker of Mycobacterium tuberculosis complex.

Authors:  Sarah Thabet; Nada Souissi
Journal:  Mol Biol Rep       Date:  2016-10-20       Impact factor: 2.316

3.  Characterization of microevolution events in Mycobacterium tuberculosis strains involved in recent transmission clusters.

Authors:  Laura Pérez-Lago; Marta Herranz; Miguel Martínez Lirola; Emilio Bouza; Darío García de Viedma
Journal:  J Clin Microbiol       Date:  2011-09-21       Impact factor: 5.948

4.  Genomic deletions classify the Beijing/W strains as a distinct genetic lineage of Mycobacterium tuberculosis.

Authors:  Anthony G Tsolaki; Sebastien Gagneux; Alexander S Pym; Yves-Olivier L Goguet de la Salmoniere; Barry N Kreiswirth; Dick Van Soolingen; Peter M Small
Journal:  J Clin Microbiol       Date:  2005-07       Impact factor: 5.948

5.  Role of large sequence polymorphisms (LSPs) in generating genomic diversity among clinical isolates of Mycobacterium tuberculosis and the utility of LSPs in phylogenetic analysis.

Authors:  David Alland; David W Lacher; Manzour Hernando Hazbón; Alifiya S Motiwala; Weihong Qi; Robert D Fleischmann; Thomas S Whittam
Journal:  J Clin Microbiol       Date:  2006-11-01       Impact factor: 5.948

6.  Polymorphic exact tandem repeat A (PETRA): a newly defined lineage of mycobacterium tuberculosis in israel originating predominantly in Sub-Saharan Africa.

Authors:  Paul J Freidlin; Drora Goldblatt; Hasia Kaidar-Shwartz; Efrat Rorman
Journal:  J Clin Microbiol       Date:  2009-10-21       Impact factor: 5.948

7.  Global study of IS6110 in a successful Mycobacterium tuberculosis strain: clues for deciphering its behavior and for its rapid detection.

Authors:  Maria Isabel Millán-Lou; Ana Isabel López-Calleja; Cristina Colmenarejo; Maria Antonia Lezcano; Maria Asunción Vitoria; Patricia del Portillo; Isabel Otal; Carlos Martín; Sofía Samper
Journal:  J Clin Microbiol       Date:  2013-08-28       Impact factor: 5.948

Review 8.  Genomic insights into tuberculosis.

Authors:  James E Galagan
Journal:  Nat Rev Genet       Date:  2014-03-25       Impact factor: 53.242

9.  Independent large scale duplications in multiple M. tuberculosis lineages overlapping the same genomic region.

Authors:  Brian Weiner; James Gomez; Thomas C Victor; Robert M Warren; Alexander Sloutsky; Bonnie B Plikaytis; James E Posey; Paul D van Helden; Nicolass C Gey van Pittius; Michael Koehrsen; Peter Sisk; Christian Stolte; Jared White; Sebastien Gagneux; Bruce Birren; Deborah Hung; Megan Murray; James Galagan
Journal:  PLoS One       Date:  2012-02-07       Impact factor: 3.240

10.  Evolutionary Trends of the Transposase-Encoding Open Reading Frames A and B (orfA and orfB) of the Mycobacterial IS6110 Insertion Sequence.

Authors:  Sara Thabet; Amine Namouchi; Helmi Mardassi
Journal:  PLoS One       Date:  2015-06-18       Impact factor: 3.240
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.