Literature DB >> 14766817

Multicenter evaluation of the performance characteristics of the bayer VERSANT HCV RNA 3.0 assay (bDNA).

Tarek Elbeik1, Johan Surtihadi, Mark Destree, Jed Gorlin, Mark Holodniy, Saeed A Jortani, Ken Kuramoto, Valerie Ng, Roland Valdes, Alexandra Valsamakis, Norah A Terrault.   

Abstract

In this multicenter evaluation, the VERSANT HCV RNA 3.0 Assay (bDNA) (Bayer Diagnostics, Tarrytown, N.Y.) was shown to have excellent reproducibility, linearity, and analytical sensitivity across specimen collection matrices (serum, EDTA, ACD-A), and hepatitis C virus (HCV) genotypes 1 to 6. The VERSANT HCV bDNA Assay has a reportable range of 615 to 7690000 (7.69 x 10(6)) IU/ml. The total coefficient of variation (CV) ranged from 32.4% at 615 IU/ml to 17% at 6.8 x 10(6) IU/ml. The assay was linear across the reportable range. Analytical specificity of 98.8% was determined by testing 999 specimens from volunteer blood donors. Evaluation of HCV genotypes using RNA transcripts of representative clones of 1a, 1b, 2a, 2b, 2c, 3a, 4a, 5a, and 6a and patient specimens showed that the largest difference between genotype 1, upon which the assay is standardized, and non-1 genotypes was within 1.5-fold. Testing of potentially interfering endogenous substances and exogenous substances and conditions found no interference in HCV-positive or HCV-negative specimens except for unconjugated bilirubin at concentrations of >or=20 mg/dl and protein at concentrations of >or=9 g/dl. Biological variability was estimated from 29 clinically stable individuals not on HCV therapy who were tested weekly over an 8-week period. The combined estimate of total (biologic plus assay) variability was 0.15 log(10) standard deviation (CV, 36.1%), a fold change of 2.6. Thus, the observed fold change between any two consecutive HCV RNA measures is expected to be less than 2.6-fold (equivalent to 0.41 log(10) IU/ml) 95% of the time in clinically stable individuals.

Entities:  

Mesh:

Substances:

Year:  2004        PMID: 14766817      PMCID: PMC344448          DOI: 10.1128/JCM.42.2.563-569.2004

Source DB:  PubMed          Journal:  J Clin Microbiol        ISSN: 0095-1137            Impact factor:   5.948


  25 in total

1.  Establishment of the first international standard for nucleic acid amplification technology (NAT) assays for HCV RNA. WHO Collaborative Study Group.

Authors:  J Saldanha; N Lelie; A Heath
Journal:  Vox Sang       Date:  1999       Impact factor: 2.144

2.  Global cost modeling analysis of HIV-1 and HCV viral load assays.

Authors:  Tarek Elbeik; Yi-Ming Arthur Chen; Serguei V Soutchkov; Richard A Loftus; Scott Beringer
Journal:  Expert Rev Pharmacoecon Outcomes Res       Date:  2003-08       Impact factor: 2.217

3.  The prevalence of hepatitis C virus infection in the United States, 1988 through 1994.

Authors:  M J Alter; D Kruszon-Moran; O V Nainan; G M McQuillan; F Gao; L A Moyer; R A Kaslow; H S Margolis
Journal:  N Engl J Med       Date:  1999-08-19       Impact factor: 91.245

Review 4.  The clinical utility of viral quantitation using molecular methods.

Authors:  R L Hodinka
Journal:  Clin Diagn Virol       Date:  1998-05-01

5.  Quantitation of hepatitis C virus RNA by third generation branched DNA-based signal amplification assay.

Authors:  R S Ross; S Viazov; S Sarr; S Hoffmann; A Kramer; M Roggendorf
Journal:  J Virol Methods       Date:  2002-03       Impact factor: 2.014

6.  Evaluation of the VERSANT HCV RNA 3.0 assay for quantification of hepatitis C virus RNA in serum.

Authors:  Pascale Trimoulet; Philippe Halfon; Eric Pohier; Hacène Khiri; Geneviève Chêne; Hervé Fleury
Journal:  J Clin Microbiol       Date:  2002-06       Impact factor: 5.948

7.  Standardization of hepatitis C virus RNA quantification.

Authors:  J M Pawlotsky; M Bouvier-Alias; C Hezode; F Darthuy; J Remire; D Dhumeaux
Journal:  Hepatology       Date:  2000-09       Impact factor: 17.425

8.  Peginterferon alfa-2b plus ribavirin compared with interferon alfa-2b plus ribavirin for initial treatment of chronic hepatitis C: a randomised trial.

Authors:  M P Manns; J G McHutchison; S C Gordon; V K Rustgi; M Shiffman; R Reindollar; Z D Goodman; K Koury; M Ling; J K Albrecht
Journal:  Lancet       Date:  2001-09-22       Impact factor: 79.321

Review 9.  Appendix: The National Institutes of Health Consensus Development Conference Management of Hepatitis C 2002.

Authors:  Leonard B Seeff; Jay H Hoofnagle
Journal:  Clin Liver Dis       Date:  2003-02       Impact factor: 6.126

10.  Preparation and characterization of RNA standards for use in quantitative branched DNA hybridization assays.

Authors:  M L Collins; C Zayati; J J Detmer; B Daly; J A Kolberg; T A Cha; B D Irvine; J Tucker; M S Urdea
Journal:  Anal Biochem       Date:  1995-03-20       Impact factor: 3.365

View more
  28 in total

1.  Transcriptional profiling of TLR-4/7/8-stimulated guinea pig splenocytes and whole blood by bDNA assay.

Authors:  Lance K Ching; Farah Mompoint; Jeffrey A Guderian; Alex Picone; Ian M Orme; Rhea N Coler; Steven G Reed; Susan L Baldwin
Journal:  J Immunol Methods       Date:  2011-08-03       Impact factor: 2.303

Review 2.  Analytical and biological variables influencing quantitative hepatitis C virus (HCV) measurement in HIV-HCV coinfection.

Authors:  C L Cooper; Curtis L Cooper; Paul MacPherson; William Cameron
Journal:  Can J Gastroenterol       Date:  2006-01       Impact factor: 3.522

3.  Health-related quality of life and impact of antiviral treatment in Chinese patients with chronic hepatitis C in Taiwan.

Authors:  Shih-Chao Kang; Shinn-Jang Hwang; Shiang-Ho Lee; Full-Young Chang; Shou-Dong Lee
Journal:  World J Gastroenterol       Date:  2005-12-21       Impact factor: 5.742

4.  Conversion strategy using an expanded genetic alphabet to assay nucleic acids.

Authors:  Zunyi Yang; Michael Durante; Lyudmyla G Glushakova; Nidhi Sharma; Nicole A Leal; Kevin M Bradley; Fei Chen; Steven A Benner
Journal:  Anal Chem       Date:  2013-04-17       Impact factor: 6.986

Review 5.  Alternative Watson-Crick Synthetic Genetic Systems.

Authors:  Steven A Benner; Nilesh B Karalkar; Shuichi Hoshika; Roberto Laos; Ryan W Shaw; Mariko Matsuura; Diego Fajardo; Patricia Moussatche
Journal:  Cold Spring Harb Perspect Biol       Date:  2016-11-01       Impact factor: 10.005

6.  Comparison of qualitative (COBAS AMPLICOR HCV 2.0 versus VERSANT HCV RNA) and quantitative (COBAS AMPLICOR HCV monitor 2.0 versus VERSANT HCV RNA 3.0) assays for hepatitis C virus (HCV) RNA detection and quantification: impact on diagnosis and treatment of HCV infections.

Authors:  Isabelle Desombere; Hans Van Vlierberghe; Sibyl Couvent; Filip Clinckspoor; Geert Leroux-Roels
Journal:  J Clin Microbiol       Date:  2005-06       Impact factor: 5.948

7.  Design of a novel molecular beacon: modification of the stem with artificially genetic alphabet.

Authors:  Pinpin Sheng; Zunyi Yang; Youngmi Kim; Yanrong Wu; Weihong Tan; Steven A Benner
Journal:  Chem Commun (Camb)       Date:  2008-09-26       Impact factor: 6.222

8.  Expanded genetic alphabets in the polymerase chain reaction.

Authors:  Zunyi Yang; Fei Chen; Stephen G Chamberlin; Steven A Benner
Journal:  Angew Chem Int Ed Engl       Date:  2010       Impact factor: 15.336

9.  2'-deoxy-1-methylpseudocytidine, a stable analog of 2'-deoxy-5-methylisocytidine.

Authors:  Hyo-Joong Kim; Nicole A Leal; Steven A Benner
Journal:  Bioorg Med Chem       Date:  2009-03-27       Impact factor: 3.641

10.  A man-made ATP-binding protein evolved independent of nature causes abnormal growth in bacterial cells.

Authors:  Joshua M Stomel; James W Wilson; Megan A León; Phillip Stafford; John C Chaput
Journal:  PLoS One       Date:  2009-10-08       Impact factor: 3.240

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.