Literature DB >> 20855970

The FLIGHT Drosophila RNAi database: 2010 update.

David Sims1, Borisas Bursteinas, Ekta Jain, Qiong Gao, Buzz Baum, Marketa Zvelebil.   

Abstract

FLIGHT (http://flight.icr.ac.uk/) is an online resource compiling data from high-throughput Drosophila in vivo and in vitro RNAi screens. FLIGHT includes details of RNAi reagents and their predicted off-target effects, alongside RNAi screen hits, scores and phenotypes, including images from high-content screens. The latest release of FLIGHT is designed to enable users to upload, analyze, integrate and share their own RNAi screens. Users can perform multiple normalizations, view quality control plots, detect and assign screen hits and compare hits from multiple screens using a variety of methods including hierarchical clustering. FLIGHT integrates RNAi screen data with microarray gene expression as well as genomic annotations and genetic/physical interaction datasets to provide a single interface for RNAi screen analysis and data-mining in Drosophila.

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Year:  2010        PMID: 20855970      PMCID: PMC3174485          DOI: 10.4161/fly.4.4.13303

Source DB:  PubMed          Journal:  Fly (Austin)        ISSN: 1933-6934            Impact factor:   2.160


  29 in total

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Journal:  Nat Genet       Date:  2000-05       Impact factor: 38.330

2.  BLAT--the BLAST-like alignment tool.

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3.  Ultrafast and memory-efficient alignment of short DNA sequences to the human genome.

Authors:  Ben Langmead; Cole Trapnell; Mihai Pop; Steven L Salzberg
Journal:  Genome Biol       Date:  2009-03-04       Impact factor: 13.583

4.  Genome-wide analysis of Notch signalling in Drosophila by transgenic RNAi.

Authors:  Jennifer L Mummery-Widmer; Masakazu Yamazaki; Thomas Stoeger; Maria Novatchkova; Sheetal Bhalerao; Doris Chen; Georg Dietzl; Barry J Dickson; Juergen A Knoblich
Journal:  Nature       Date:  2009-04-12       Impact factor: 49.962

5.  Genome-wide RNAi screen identifies genes involved in intestinal pathogenic bacterial infection.

Authors:  Shane J F Cronin; Nadine T Nehme; Stefanie Limmer; Samuel Liegeois; J Andrew Pospisilik; Daniel Schramek; Andreas Leibbrandt; Ricardo de Matos Simoes; Susanne Gruber; Urszula Puc; Ingo Ebersberger; Tamara Zoranovic; G Gregory Neely; Arndt von Haeseler; Dominique Ferrandon; Josef M Penninger
Journal:  Science       Date:  2009-06-11       Impact factor: 47.728

6.  GenomeRNAi: a database for cell-based RNAi phenotypes. 2009 update.

Authors:  Moritz Gilsdorf; Thomas Horn; Zeynep Arziman; Oliver Pelz; Evgeny Kiner; Michael Boutros
Journal:  Nucleic Acids Res       Date:  2009-11-12       Impact factor: 16.971

7.  The Universal Protein Resource (UniProt) in 2010.

Authors: 
Journal:  Nucleic Acids Res       Date:  2009-10-20       Impact factor: 16.971

8.  FlyBase: enhancing Drosophila Gene Ontology annotations.

Authors:  Susan Tweedie; Michael Ashburner; Kathleen Falls; Paul Leyland; Peter McQuilton; Steven Marygold; Gillian Millburn; David Osumi-Sutherland; Andrew Schroeder; Ruth Seal; Haiyan Zhang
Journal:  Nucleic Acids Res       Date:  2008-10-23       Impact factor: 16.971

9.  InterPro: the integrative protein signature database.

Authors:  Sarah Hunter; Rolf Apweiler; Teresa K Attwood; Amos Bairoch; Alex Bateman; David Binns; Peer Bork; Ujjwal Das; Louise Daugherty; Lauranne Duquenne; Robert D Finn; Julian Gough; Daniel Haft; Nicolas Hulo; Daniel Kahn; Elizabeth Kelly; Aurélie Laugraud; Ivica Letunic; David Lonsdale; Rodrigo Lopez; Martin Madera; John Maslen; Craig McAnulla; Jennifer McDowall; Jaina Mistry; Alex Mitchell; Nicola Mulder; Darren Natale; Christine Orengo; Antony F Quinn; Jeremy D Selengut; Christian J A Sigrist; Manjula Thimma; Paul D Thomas; Franck Valentin; Derek Wilson; Cathy H Wu; Corin Yeats
Journal:  Nucleic Acids Res       Date:  2008-10-21       Impact factor: 16.971

10.  Parallel RNAi screens across different cell lines identify generic and cell type-specific regulators of actin organization and cell morphology.

Authors:  Tao Liu; David Sims; Buzz Baum
Journal:  Genome Biol       Date:  2009-03-05       Impact factor: 13.583

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  2 in total

1.  Comparative RNAi screening identifies a conserved core metazoan actinome by phenotype.

Authors:  Jennifer L Rohn; David Sims; Tao Liu; Marina Fedorova; Frieder Schöck; Joseph Dopie; Maria K Vartiainen; Amy A Kiger; Norbert Perrimon; Buzz Baum
Journal:  J Cell Biol       Date:  2011-09-05       Impact factor: 10.539

2.  FlyRNAi.org--the database of the Drosophila RNAi screening center: 2012 update.

Authors:  Ian T Flockhart; Matthew Booker; Yanhui Hu; Benjamin McElvany; Quentin Gilly; Bernard Mathey-Prevot; Norbert Perrimon; Stephanie E Mohr
Journal:  Nucleic Acids Res       Date:  2011-11-08       Impact factor: 16.971

  2 in total

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