Literature DB >> 14757052

The clamp-loader-helicase interaction in Bacillus. Atomic force microscopy reveals the structural organisation of the DnaB-tau complex in Bacillus.

Anna Haroniti1, Christopher Anderson, Zara Doddridge, Laurence Gardiner, Clive J Roberts, Stephanie Allen, Panos Soultanas.   

Abstract

The clamp-loader-helicase interaction is an important feature of the replisome. Although significant biochemical and structural work has been carried out on the clamp-loader-clamp-DNA polymerase alpha interactions in Escherichia coli, the clamp-loader-helicase interaction is poorly understood by comparison. The tau subunit of the clamp-loader mediates the interaction with DnaB. We have recently characterised this interaction in the Bacillus system and established a tau(5)-DnaB(6) stoichiometry. Here, we have obtained atomic force microscopy images of the tau-DnaB complex that reveal the first structural insight into its architecture. We show that despite the reported absence of the shorter gamma version in Bacillus, tau has a domain organisation similar to its E.coli counterpart and possesses an equivalent C-terminal domain that interacts with DnaB. The interaction interface of DnaB is also localised in its C-terminal domain. The combined data contribute towards our understanding of the bacterial replisome.

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Year:  2004        PMID: 14757052      PMCID: PMC3034218          DOI: 10.1016/j.jmb.2003.12.043

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  38 in total

1.  Crystal structure of the N-terminal domain of the DnaB hexameric helicase.

Authors:  D Fass; C E Bogden; J M Berger
Journal:  Structure       Date:  1999-06-15       Impact factor: 5.006

2.  The DnaX-binding subunits delta' and psi are bound to gamma and not tau in the DNA polymerase III holoenzyme.

Authors:  B P Glover; C S McHenry
Journal:  J Biol Chem       Date:  2000-02-04       Impact factor: 5.157

3.  A novel assembly mechanism for the DNA polymerase III holoenzyme DnaX complex: association of deltadelta' with DnaX(4) forms DnaX(3)deltadelta'.

Authors:  A E Pritchard; H G Dallmann; B P Glover; C S McHenry
Journal:  EMBO J       Date:  2000-12-01       Impact factor: 11.598

4.  Trading places on DNA--a three-point switch underlies primer handoff from primase to the replicative DNA polymerase.

Authors:  A Yuzhakov; Z Kelman; M O'Donnell
Journal:  Cell       Date:  1999-01-08       Impact factor: 41.582

5.  The discrimination of IgM and IgG type antibodies and Fab' and F(ab)2 antibody fragments on an industrial substrate using scanning force microscopy.

Authors:  C J Roberts; M C Davies; S J Tendler; P M Williams; J Davies; A C Dawkes; G D Yearwood; J C Edwards
Journal:  Ultramicroscopy       Date:  1996-02       Impact factor: 2.689

6.  The DNA replication machine of a gram-positive organism.

Authors:  I Bruck; M O'Donnell
Journal:  J Biol Chem       Date:  2000-09-15       Impact factor: 5.157

7.  Interaction between yeast RNA polymerase III and transcription factor TFIIIC via ABC10alpha and tau131 subunits.

Authors:  H Dumay; L Rubbi; A Sentenac; C Marck
Journal:  J Biol Chem       Date:  1999-11-19       Impact factor: 5.157

8.  Nonlinearity in genetic decoding: homologous DNA replicase genes use alternatives of transcriptional slippage or translational frameshifting.

Authors:  B Larsen; N M Wills; C Nelson; J F Atkins; R F Gesteland
Journal:  Proc Natl Acad Sci U S A       Date:  2000-02-15       Impact factor: 11.205

9.  The chi psi subunits of DNA polymerase III holoenzyme bind to single-stranded DNA-binding protein (SSB) and facilitate replication of an SSB-coated template.

Authors:  B P Glover; C S McHenry
Journal:  J Biol Chem       Date:  1998-09-04       Impact factor: 5.157

10.  Mapping protein-protein interactions within a stable complex of DNA primase and DnaB helicase from Bacillus stearothermophilus.

Authors:  L E Bird; H Pan; P Soultanas; D B Wigley
Journal:  Biochemistry       Date:  2000-01-11       Impact factor: 3.162

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  12 in total

1.  Breaking the rules: bacteria that use several DNA polymerase IIIs.

Authors:  Charles S McHenry
Journal:  EMBO Rep       Date:  2011-04-08       Impact factor: 8.807

2.  Allosteric regulation of the primase (DnaG) activity by the clamp-loader (tau) in vitro.

Authors:  Kiran Chintakayala; Cristina Machón; Anna Haroniti; Marilyn A Larson; Steven H Hinrichs; Mark A Griep; Panos Soultanas
Journal:  Mol Microbiol       Date:  2009-04       Impact factor: 3.501

3.  Nucleotide and partner-protein control of bacterial replicative helicase structure and function.

Authors:  Melania S Strycharska; Ernesto Arias-Palomo; Artem Y Lyubimov; Jan P Erzberger; Valerie L O'Shea; Carlos J Bustamante; James M Berger
Journal:  Mol Cell       Date:  2013-12-26       Impact factor: 17.970

4.  Solution structure of the helicase-interaction domain of the primase DnaG: a model for helicase activation.

Authors:  Karl Syson; Jenny Thirlway; Andrea M Hounslow; Panos Soultanas; Jonathan P Waltho
Journal:  Structure       Date:  2005-04       Impact factor: 5.006

5.  DnaG interacts with a linker region that joins the N- and C-domains of DnaB and induces the formation of 3-fold symmetric rings.

Authors:  Jenny Thirlway; Ian J Turner; Christopher T Gibson; Laurence Gardiner; Kevin Brady; Stephanie Allen; Clive J Roberts; Panos Soultanas
Journal:  Nucleic Acids Res       Date:  2004-06-01       Impact factor: 16.971

6.  Clamp-loader-helicase interaction in Bacillus. Leucine 381 is critical for pentamerization and helicase binding of the Bacillus tau protein.

Authors:  A Haroniti; R Till; M C M Smith; P Soultanas
Journal:  Biochemistry       Date:  2003-09-23       Impact factor: 3.162

7.  Domain swapping reveals that the C- and N-terminal domains of DnaG and DnaB, respectively, are functional homologues.

Authors:  Kiran Chintakayala; Marilynn A Larson; William H Grainger; David J Scott; Mark A Griep; Steven H Hinrichs; Panos Soultanas
Journal:  Mol Microbiol       Date:  2007-03       Impact factor: 3.501

8.  Structure of the PolIIIα-τc-DNA complex suggests an atomic model of the replisome.

Authors:  Bin Liu; Jinzhong Lin; Thomas A Steitz
Journal:  Structure       Date:  2013-03-07       Impact factor: 5.006

9.  Insights into the structure and assembly of the Bacillus subtilis clamp-loader complex and its interaction with the replicative helicase.

Authors:  José P Afonso; Kiran Chintakayala; Chatrudee Suwannachart; Svetlana Sedelnikova; Kevin Giles; John B Hoyes; Panos Soultanas; John B Rafferty; Neil J Oldham
Journal:  Nucleic Acids Res       Date:  2013-03-21       Impact factor: 16.971

10.  Solution structure of Domains IVa and V of the tau subunit of Escherichia coli DNA polymerase III and interaction with the alpha subunit.

Authors:  Xun-Cheng Su; Slobodan Jergic; Max A Keniry; Nicholas E Dixon; Gottfried Otting
Journal:  Nucleic Acids Res       Date:  2007-04-22       Impact factor: 16.971

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