Literature DB >> 14755155

Measurement of dipolar cross-correlation in methylene groups in uniformly 13C-, 15N-labeled proteins.

Yu Zheng1, Daiwen Yang.   

Abstract

A CC(CO)NH TOCSY-based 3D pulse scheme is presented for measuring (1)H-(13)C dipole-dipole cross-correlated relaxation at CH(2) positions in uniformly (13)C-, (15)N-labeled proteins. Simulations based on magnetization evolution under relaxation and scalar coupling interactions show that cross-correlation rates between (1)H-(13)C dipoles in CH(2) groups can be simply obtained from the intensities of (13)C triplets. The normalized cross-correlation relaxation rates are related to cross-correlation order parameters for macromolecules undergoing isotropic motion, which reflect the degrees of spatial restriction of CH(2) groups. The study on human intestinal fatty acid binding protein (131 residues) in the presence of oleic acid demonstrates that side chain dynamics at most CH(2) positions can be characterized for proteins less than 15 kDa in size, with the proposed TOCSY-based approach.

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Year:  2004        PMID: 14755155     DOI: 10.1023/B:JNMR.0000013826.82936.0e

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  17 in total

Review 1.  Dynamic activation of protein function: a view emerging from NMR spectroscopy.

Authors:  A J Wand
Journal:  Nat Struct Biol       Date:  2001-11

2.  Improved estimation of CSA-dipolar coupling cross-correlation rates from laboratory-frame relaxation experiments

Authors: 
Journal:  J Magn Reson       Date:  1998-10       Impact factor: 2.229

3.  Direct measurement of angles between bond vectors in high-resolution NMR.

Authors:  B Reif; M Hennig; C Griesinger
Journal:  Science       Date:  1997-05-23       Impact factor: 47.728

4.  A study of protein side-chain dynamics from new 2H auto-correlation and 13C cross-correlation NMR experiments: application to the N-terminal SH3 domain from drk.

Authors:  D Yang; A Mittermaier; Y K Mok; L E Kay
Journal:  J Mol Biol       Date:  1998-03-13       Impact factor: 5.469

5.  Deuterium spin probes of side-chain dynamics in proteins. 1. Measurement of five relaxation rates per deuteron in (13)C-labeled and fractionally (2)H-enriched proteins in solution.

Authors:  Oscar Millet; D R Muhandiram; Nikolai R Skrynnikov; Lewis E Kay
Journal:  J Am Chem Soc       Date:  2002-06-05       Impact factor: 15.419

6.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

7.  Conformational exchange on the microsecond time scale in alpha-helix and beta-hairpin peptides measured by 13C NMR transverse relaxation.

Authors:  I Nesmelova; A Krushelnitsky; D Idiyatullin; F Blanco; M Ramirez-Alvarado; V A Daragan; L Serrano; K H Mayo
Journal:  Biochemistry       Date:  2001-03-06       Impact factor: 3.162

8.  Dynamics of beta-CH and beta-CH2 Groups of Amino Acid Side Chains in Proteins.

Authors:  J Engelke; H Rüterjans
Journal:  J Biomol NMR       Date:  1998-02       Impact factor: 2.835

9.  13C nuclear magnetic resonance relaxation-derived psi, phi bond rotational energy barriers and rotational restrictions for glycine 13C alpha-methylenes in a GXX-repeat hexadecapeptide.

Authors:  V A Daragan; M A Kloczewiak; K H Mayo
Journal:  Biochemistry       Date:  1993-10-12       Impact factor: 3.162

10.  Measurement of cross correlation between dipolar coupling and chemical shift anisotropy in the spin relaxation of 13C, 15N-labeled proteins.

Authors:  R Ghose; K Huang; J H Prestegard
Journal:  J Magn Reson       Date:  1998-12       Impact factor: 2.229

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  5 in total

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Authors:  Tatyana I Igumenova; Kendra King Frederick; A Joshua Wand
Journal:  Chem Rev       Date:  2006-05       Impact factor: 60.622

2.  Side chain: backbone projections in aromatic and ASX residues from NMR cross-correlated relaxation.

Authors:  Beat Vögeli; Roland Riek
Journal:  J Biomol NMR       Date:  2009-11-11       Impact factor: 2.835

3.  Protein side-chain dynamics and residual conformational entropy.

Authors:  Nikola Trbovic; Jae-Hyun Cho; Robert Abel; Richard A Friesner; Mark Rance; Arthur G Palmer
Journal:  J Am Chem Soc       Date:  2009-01-21       Impact factor: 15.419

4.  Conformational entropy changes upon lactose binding to the carbohydrate recognition domain of galectin-3.

Authors:  Carl Diehl; Samuel Genheden; Kristofer Modig; Ulf Ryde; Mikael Akke
Journal:  J Biomol NMR       Date:  2009-07-30       Impact factor: 2.835

5.  Proton TOCSY NMR relaxation rates quantitate protein side chain mobility in the Pin1 WW domain.

Authors:  Gaddafi I Danmaliki; Peter M Hwang
Journal:  J Biomol NMR       Date:  2022-07-21       Impact factor: 2.582

  5 in total

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