Literature DB >> 12033875

Deuterium spin probes of side-chain dynamics in proteins. 1. Measurement of five relaxation rates per deuteron in (13)C-labeled and fractionally (2)H-enriched proteins in solution.

Oscar Millet1, D R Muhandiram, Nikolai R Skrynnikov, Lewis E Kay.   

Abstract

New pulse sequences are presented for the measurement of the relaxation of deuterium double quantum, quadrupolar order, and transverse antiphase magnetization in (13)CH(2)D methyl groups of (15)N-, (13)C-labeled, fractionally deuterated proteins. Together with previously developed experiments for measuring deuterium longitudinal and transverse decay rates [Muhandiram, D. R.; Yamazaki, T.; Sykes, B. D.; Kay, L. E. J. Am. Chem. Soc. 1995, 117, 11536], these schemes allow measurement of the five unique decay constants of a single deuteron, providing an unprecedented opportunity to investigate side-chain dynamics in proteins. All five deuterium relaxation rates have been measured for deuterons in the methyl groups of the B1 immunoglobulin binding domain of peptostreptococcal protein L and the N-terminal SH3 domain from the protein drk. Since values of the spectral density function at only three different frequencies contribute to the five relaxation rates, the self-consistency of the relaxation data is readily established. Very good agreement is obtained between calculated parameters describing the amplitudes and time scales of motion when different subsets of the relaxation data are employed.

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Year:  2002        PMID: 12033875     DOI: 10.1021/ja012497y

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  66 in total

1.  Prediction of methyl-side chain dynamics in proteins.

Authors:  Dengming Ming; Rafael Brüschweiler
Journal:  J Biomol NMR       Date:  2004-07       Impact factor: 2.835

2.  The response of internal dynamics to hydrophobic core mutations in the SH3 domain from the Fyn tyrosine kinase.

Authors:  Anthony Mittermaier; Lewis E Kay
Journal:  Protein Sci       Date:  2004-04       Impact factor: 6.725

3.  Is a malleable protein necessarily highly dynamic? The hydrophobic core of the nuclear coactivator binding domain is well ordered.

Authors:  Magnus Kjaergaard; Flemming M Poulsen; Kaare Teilum
Journal:  Biophys J       Date:  2012-04-03       Impact factor: 4.033

4.  Thermal coefficients of the methyl groups within ubiquitin.

Authors:  T Michael Sabo; Davood Bakhtiari; Korvin F A Walter; Robert L McFeeters; Karin Giller; Stefan Becker; Christian Griesinger; Donghan Lee
Journal:  Protein Sci       Date:  2012-03-02       Impact factor: 6.725

Review 5.  Structural dynamics of bio-macromolecules by NMR: the slowly relaxing local structure approach.

Authors:  Eva Meirovitch; Yury E Shapiro; Antonino Polimeno; Jack H Freed
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2010-05       Impact factor: 9.795

6.  The unusual internal motion of the villin headpiece subdomain.

Authors:  Kyle W Harpole; Evan S O'Brien; Matthew A Clark; C James McKnight; Liliya Vugmeyster; A Joshua Wand
Journal:  Protein Sci       Date:  2015-10-29       Impact factor: 6.725

7.  Accurate determination of rates from non-uniformly sampled relaxation data.

Authors:  Matthew A Stetz; A Joshua Wand
Journal:  J Biomol NMR       Date:  2016-07-08       Impact factor: 2.835

8.  Analysis of side chain mobility among protein G B1 domain mutants with widely varying stabilities.

Authors:  Virginia A Goehlert; Ewa Krupinska; Lynne Regan; Martin J Stone
Journal:  Protein Sci       Date:  2004-11-10       Impact factor: 6.725

9.  Measurement of methyl 13C-1H cross-correlation in uniformly 13C-, 15N-, labeled proteins.

Authors:  Weidong Liu; Yu Zheng; David P Cistola; Daiwen Yang
Journal:  J Biomol NMR       Date:  2003-12       Impact factor: 2.835

10.  Dynamically Coupled Residues within the SH2 Domain of FYN Are Key to Unlocking Its Activity.

Authors:  Radu Huculeci; Elisa Cilia; Agatha Lyczek; Lieven Buts; Klaartje Houben; Markus A Seeliger; Nico van Nuland; Tom Lenaerts
Journal:  Structure       Date:  2016-09-29       Impact factor: 5.006

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