Literature DB >> 8399202

13C nuclear magnetic resonance relaxation-derived psi, phi bond rotational energy barriers and rotational restrictions for glycine 13C alpha-methylenes in a GXX-repeat hexadecapeptide.

V A Daragan1, M A Kloczewiak, K H Mayo.   

Abstract

Spin-lattice relaxation of 13C multiplet spectra and [1H]-13C nuclear Overhauser enhancement (NOE) coefficients of selectively 13C-enriched glycines in a collagen GXX-repeat motif hexadecapeptide, G1VKG4DKG7NPG10WPG13APY, has been investigated. Data have been collected at two 13C Larmor frequencies (90 and 150 MHz) over the temperature range from 5 to 70 degrees C. Relaxation data indicate that the most restricted internal rotations are at G7 and G10. Mobility of other glycine residues can be arranged in the order G4, G13, and G1. G1 glycine shows that least change in motional anisotropy with temperature. Several motional models have been used to explain the experimental data. While any one model is not completely satisfactory in describing all experimental parameters, only the model of restricted internal diffusion yields the observed positive sign for the cross-correlated spectral densities. Energetic and angular limits of psi, phi bond rotational motions derived from relaxation data and the restricted diffusion model are in good agreement with those calculated as Ramachandran potentional energy profiles. G1 rotational energy barriers for overall tumbling and internal rotation are approximately equal, suggesting strong interaction between the N-terminus and water. Internal rotational parameters for GV and GG dipeptides confirm this view. Nonterminal glycine internal motions are apparently less dependent on water-peptide interactions.

Entities:  

Mesh:

Substances:

Year:  1993        PMID: 8399202     DOI: 10.1021/bi00091a007

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  10 in total

1.  Specific binding of ethanol to cholesterol in organic solvents.

Authors:  V A Daragan; A M Voloshin; S V Chochina; T N Khazanovich; W G Wood; N A Avdulov; K H Mayo
Journal:  Biophys J       Date:  2000-07       Impact factor: 4.033

Review 2.  Characterization of the fast dynamics of protein amino acid side chains using NMR relaxation in solution.

Authors:  Tatyana I Igumenova; Kendra King Frederick; A Joshua Wand
Journal:  Chem Rev       Date:  2006-05       Impact factor: 60.622

3.  Side chain mobility as monitored by CH-CH cross correlation: the example of cytochrome b5.

Authors:  L Banci; I Bertini; I C Felli; P Hajieva; M S Viezzoli
Journal:  J Biomol NMR       Date:  2001-05       Impact factor: 2.835

4.  Backbone and side-chain dynamics of residues in a partially folded beta-sheet peptide from platelet factor-4.

Authors:  V A Daragan; E E Ilyina; C G Fields; G B Fields; K H Mayo
Journal:  Protein Sci       Date:  1997-02       Impact factor: 6.725

5.  Internal motional amplitudes and correlated bond rotations in an alpha-helical peptide derived from 13C and 15N NMR relaxation.

Authors:  D Idiyatullin; A Krushelnitsky; I Nesmelova; F Blanco; V A Daragan; L Serrano; K H Mayo
Journal:  Protein Sci       Date:  2000-11       Impact factor: 6.725

6.  Dynamics of beta-CH and beta-CH2 Groups of Amino Acid Side Chains in Proteins.

Authors:  J Engelke; H Rüterjans
Journal:  J Biomol NMR       Date:  1998-02       Impact factor: 2.835

7.  Motional dynamics of residues in a beta-hairpin peptide measured by 13C-NMR relaxation.

Authors:  M Ramirez-Alvarado; V A Daragan; L Serrano; K H Mayo
Journal:  Protein Sci       Date:  1998-03       Impact factor: 6.725

8.  Measurement of dipolar cross-correlation in methylene groups in uniformly 13C-, 15N-labeled proteins.

Authors:  Yu Zheng; Daiwen Yang
Journal:  J Biomol NMR       Date:  2004-02       Impact factor: 2.835

9.  Internal motions of apo-neocarzinostatin as studied by 13C NMR methine relaxation at natural abundance.

Authors:  J Mispelter; C Lefèvre; E Adjadj; E Quiniou; V Favaudon
Journal:  J Biomol NMR       Date:  1995-04       Impact factor: 2.835

10.  Pro4 prolyl peptide bond isomerization in human galectin-7 modulates the monomer-dimer equilibrum to affect function.

Authors:  Michelle C Miller; Irina V Nesmelova; Vladimir A Daragan; Hans Ippel; Malwina Michalak; Aurelio Dregni; Herbert Kaltner; Jürgen Kopitz; Hans-Joachim Gabius; Kevin H Mayo
Journal:  Biochem J       Date:  2020-09-18       Impact factor: 3.857

  10 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.