Literature DB >> 14747573

The human immunodeficiency virus type 1 ribosomal frameshifting site is an invariant sequence determinant and an important target for antiviral therapy.

Preetha Biswas1, Xi Jiang, Annmarie L Pacchia, Joseph P Dougherty, Stuart W Peltz.   

Abstract

Human immunodeficiency virus type 1 (HIV-1) utilizes a distinctive form of gene regulation as part of its life cycle, termed programmed -1 ribosomal frameshifting, to produce the required ratio of the Gag and Gag-Pol polyproteins. We carried out a sequence comparison of 1,000 HIV-1 sequences at the slippery site (UUUUUUA) and found that the site is invariant, which is somewhat surprising for a virus known for its variability. This prompted us to prepare a series of mutations to examine their effect upon frameshifting and viral infectivity. Among the series of mutations were changes of the HIV-1 slippery site to those effectively utilized by other viruses, because such mutations would be anticipated to have a relatively mild effect upon frameshifting. The results demonstrate that any change to the slippery site reduced frameshifting levels and also dramatically inhibited infectivity. Because ribosomal frameshifting is essential for HIV-1 replication and it is surprisingly resistant to mutation, modulation of HIV-1 frameshifting efficiency potentially represents an important target for the development of novel antiviral therapeutics.

Entities:  

Mesh:

Substances:

Year:  2004        PMID: 14747573      PMCID: PMC369415          DOI: 10.1128/jvi.78.4.2082-2087.2004

Source DB:  PubMed          Journal:  J Virol        ISSN: 0022-538X            Impact factor:   5.103


  28 in total

1.  Ribosomal frameshifting efficiency and gag/gag-pol ratio are critical for yeast M1 double-stranded RNA virus propagation.

Authors:  J D Dinman; R B Wickner
Journal:  J Virol       Date:  1992-06       Impact factor: 5.103

Review 2.  The biochemistry of AIDS.

Authors:  Y N Vaishnav; F Wong-Staal
Journal:  Annu Rev Biochem       Date:  1991       Impact factor: 23.643

3.  Characterization of ribosomal frameshifting in HIV-1 gag-pol expression.

Authors:  T Jacks; M D Power; F R Masiarz; P A Luciw; P J Barr; H E Varmus
Journal:  Nature       Date:  1988-01-21       Impact factor: 49.962

4.  Efficiency of reinitiation of translation on human immunodeficiency virus type 1 mRNAs is determined by the length of the upstream open reading frame and by intercistronic distance.

Authors:  B G Luukkonen; W Tan; S Schwartz
Journal:  J Virol       Date:  1995-07       Impact factor: 5.103

5.  Partial inhibition of the human immunodeficiency virus type 1 protease results in aberrant virus assembly and the formation of noninfectious particles.

Authors:  A H Kaplan; J A Zack; M Knigge; D A Paul; D J Kempf; D W Norbeck; R Swanstrom
Journal:  J Virol       Date:  1993-07       Impact factor: 5.103

6.  Human immunodeficiency virus type 1 gag-pol frameshifting is dependent on downstream mRNA secondary structure: demonstration by expression in vivo.

Authors:  N T Parkin; M Chamorro; H E Varmus
Journal:  J Virol       Date:  1992-08       Impact factor: 5.103

7.  A -1 ribosomal frameshift in a double-stranded RNA virus of yeast forms a gag-pol fusion protein.

Authors:  J D Dinman; T Icho; R B Wickner
Journal:  Proc Natl Acad Sci U S A       Date:  1991-01-01       Impact factor: 11.205

8.  An RNA pseudoknot and an optimal heptameric shift site are required for highly efficient ribosomal frameshifting on a retroviral messenger RNA.

Authors:  M Chamorro; N Parkin; H E Varmus
Journal:  Proc Natl Acad Sci U S A       Date:  1992-01-15       Impact factor: 11.205

9.  Signals for ribosomal frameshifting in the Rous sarcoma virus gag-pol region.

Authors:  T Jacks; H D Madhani; F R Masiarz; H E Varmus
Journal:  Cell       Date:  1988-11-04       Impact factor: 41.582

10.  Mutational analysis of the "slippery-sequence" component of a coronavirus ribosomal frameshifting signal.

Authors:  I Brierley; A J Jenner; S C Inglis
Journal:  J Mol Biol       Date:  1992-09-20       Impact factor: 5.469

View more
  43 in total

1.  Achieving a golden mean: mechanisms by which coronaviruses ensure synthesis of the correct stoichiometric ratios of viral proteins.

Authors:  Ewan P Plant; Rasa Rakauskaite; Deborah R Taylor; Jonathan D Dinman
Journal:  J Virol       Date:  2010-02-17       Impact factor: 5.103

2.  A homogeneous cell-based bicistronic fluorescence assay for high-throughput identification of drugs that perturb viral gene recoding and read-through of nonsense stop codons.

Authors:  Tony S Cardno; Elizabeth S Poole; Suneeth F Mathew; Ryan Graves; Warren P Tate
Journal:  RNA       Date:  2009-06-17       Impact factor: 4.942

Review 3.  The role of programmed-1 ribosomal frameshifting in coronavirus propagation.

Authors:  Ewan P Plant; Jonathan D Dinman
Journal:  Front Biosci       Date:  2008-05-01

4.  Statistical potentials for hairpin and internal loops improve the accuracy of the predicted RNA structure.

Authors:  David P Gardner; Pengyu Ren; Stuart Ozer; Robin R Gutell
Journal:  J Mol Biol       Date:  2011-08-23       Impact factor: 5.469

5.  Single-molecule measurements of the CCR5 mRNA unfolding pathways.

Authors:  Michel de Messieres; Jen-Chien Chang; Ashton Trey Belew; Arturas Meskauskas; Jonathan D Dinman; Arthur La Porta
Journal:  Biophys J       Date:  2014-01-07       Impact factor: 4.033

6.  Architecture and secondary structure of an entire HIV-1 RNA genome.

Authors:  Joseph M Watts; Kristen K Dang; Robert J Gorelick; Christopher W Leonard; Julian W Bess; Ronald Swanstrom; Christina L Burch; Kevin M Weeks
Journal:  Nature       Date:  2009-08-06       Impact factor: 49.962

7.  Class II transactivator (CIITA) enhances cytoplasmic processing of HIV-1 Pr55Gag.

Authors:  Kristen A Porter; Lauren N Kelley; Annette George; Jonathan A Harton; Karen M Duus
Journal:  PLoS One       Date:  2010-06-24       Impact factor: 3.240

Review 8.  Roadblocks and resolutions in eukaryotic translation.

Authors:  Anthony P Schuller; Rachel Green
Journal:  Nat Rev Mol Cell Biol       Date:  2018-08       Impact factor: 94.444

9.  Selection of peptides interfering with a ribosomal frameshift in the human immunodeficiency virus type 1.

Authors:  Dominic Dulude; Gabriel Théberge-Julien; Léa Brakier-Gingras; Nikolaus Heveker
Journal:  RNA       Date:  2008-03-26       Impact factor: 4.942

10.  Interaction of the HIV-1 frameshift signal with the ribosome.

Authors:  Marie-Hélène Mazauric; Yeonee Seol; Satoko Yoshizawa; Koen Visscher; Dominique Fourmy
Journal:  Nucleic Acids Res       Date:  2009-12       Impact factor: 16.971

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.