Literature DB >> 14745805

Structural diversity of amyloid fibril formed in human calcitonin as revealed by site-directed 13C solid-state NMR spectroscopy.

Akira Naito1, Miya Kamihira, Ryozo Inoue, Hazime Saitô.   

Abstract

Fibril formation in human calcitonin (hCT) from aqueous solution at pH 4.1 was examined and compared with those at pH 3.3 and 7.5 corresponding to three different net charges by means of site-directed (13)C solid-state NMR spectroscopy. Notably, the observed (13)C chemical shifts and lineshapes of the (13)C CP/MAS spectra differed substantially among fibrils prepared at different pHs. It was found that antiparallel beta-sheet structures were formed at pH 7.5 and 4.1 in the central core regions. In the C-terminal region, random coils were formed at both pH 7.5 and 4.1, although the random coil region at pH 4.1 was larger than that at pH 7.5. Fibrillation kinetics analyzed by a two-step autocatalytic reaction mechanism showed that the rate constants k(1) and k(2) for nucleation and maturation reactions of the fibril formation, respectively, were separately determined and the values correlated well with the net positive charges of Lys(18) and His(20) rather than the existence of a negative charge of Asp(15). Further, an attempt was made to assess interatomic distances between amide nitrogen and carbonyl carbon of neighboring chains of (13)C, (15)N-labeled hCT and a model pentapeptide by (13)C REDOR measurements by taking into account its dipolar interaction analyzed by the 3 spin system proposed previously. A unique chain packing of the antiparallel beta-sheets was proposed as a dominant fibril structure, although the possibility of a contribution of chain packing consisting of sliding one or two residues perpendicular to the fibril direction cannot be ruled out. In addition, it appears that the phenyl rings of Phe(16) are aligned on the same side of the beta-sheet and make the beta-sheet stable by forming pi-pi interactions between the beta-strands. Copyright 2004 John Wiley & Sons, Ltd.

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Year:  2004        PMID: 14745805     DOI: 10.1002/mrc.1323

Source DB:  PubMed          Journal:  Magn Reson Chem        ISSN: 0749-1581            Impact factor:   2.447


  22 in total

1.  The stability and dynamics of the human calcitonin amyloid peptide DFNKF.

Authors:  Hui-Hsu Tsai; David Zanuy; Nurit Haspel; Kannan Gunasekaran; Buyong Ma; Chung-Jung Tsai; Ruth Nussinov
Journal:  Biophys J       Date:  2004-07       Impact factor: 4.033

2.  Sampling the self-assembly pathways of KFFE hexamers.

Authors:  Guanghong Wei; Normand Mousseau; Philippe Derreumaux
Journal:  Biophys J       Date:  2004-09-17       Impact factor: 4.033

3.  Modeling the Alzheimer Abeta17-42 fibril architecture: tight intermolecular sheet-sheet association and intramolecular hydrated cavities.

Authors:  Jie Zheng; Hyunbum Jang; Buyong Ma; Chung-Jun Tsai; Ruth Nussinov
Journal:  Biophys J       Date:  2007-08-03       Impact factor: 4.033

4.  Molecular basis for amyloid fibril formation and stability.

Authors:  O Sumner Makin; Edward Atkins; Pawel Sikorski; Jan Johansson; Louise C Serpell
Journal:  Proc Natl Acad Sci U S A       Date:  2005-01-03       Impact factor: 11.205

5.  Energy landscape of amyloidogenic peptide oligomerization by parallel-tempering molecular dynamics simulation: significant role of Asn ladder.

Authors:  Hui-Hsu Gavin Tsai; Meital Reches; Chung-Jung Tsai; Kannan Gunasekaran; Ehud Gazit; Ruth Nussinov
Journal:  Proc Natl Acad Sci U S A       Date:  2005-05-27       Impact factor: 11.205

6.  Characterization of amyloid structures at the molecular level by solid state nuclear magnetic resonance spectroscopy.

Authors:  Robert Tycko
Journal:  Methods Enzymol       Date:  2006       Impact factor: 1.600

Review 7.  Amyloid fibrils: abnormal protein assembly.

Authors:  Roma N Rambaran; Louise C Serpell
Journal:  Prion       Date:  2008-07-20       Impact factor: 3.931

Review 8.  Self assembly of short aromatic peptides into amyloid fibrils and related nanostructures.

Authors:  Ehud Gazit
Journal:  Prion       Date:  2007-01-02       Impact factor: 3.931

9.  Parallel beta-sheets and polar zippers in amyloid fibrils formed by residues 10-39 of the yeast prion protein Ure2p.

Authors:  Jerry C C Chan; Nathan A Oyler; Wai-Ming Yau; Robert Tycko
Journal:  Biochemistry       Date:  2005-08-09       Impact factor: 3.162

10.  Not All β-Sheets Are the Same: Amyloid Infrared Spectra, Transition Dipole Strengths, and Couplings Investigated by 2D IR Spectroscopy.

Authors:  Justin P Lomont; Joshua S Ostrander; Jia-Jung Ho; Megan K Petti; Martin T Zanni
Journal:  J Phys Chem B       Date:  2017-09-19       Impact factor: 2.991

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