Literature DB >> 14729219

Poplar genome sequence: functional genomics in an ecologically dominant plant species.

Amy M Brunner1, Victor B Busov, Steven H Strauss.   

Abstract

In addition to their value for wood products, members of the genus Populus (poplars) provide a range of ecological services, including carbon sequestration, bioremediation, nutrient cycling, biofiltration and diverse habitats. They are also widely used model organisms for tree molecular biology and biotechnology. The sequencing of the poplar genome to an approximately 6x depth adds to a long list of important attributes for research. These include facile transformation, vegetative propagation, rapid growth, modest genome size and extensive expressed sequence tags. Here, we discuss how the genome sequence and transformability of poplar, together with its high levels of genetic and ecological diversity, are enabling new insights into the genetic programs controlling ontogeny, ecological adaptation and environmental physiology of trees.

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Year:  2004        PMID: 14729219     DOI: 10.1016/j.tplants.2003.11.006

Source DB:  PubMed          Journal:  Trends Plant Sci        ISSN: 1360-1385            Impact factor:   18.313


  66 in total

1.  A Populus EST resource for plant functional genomics.

Authors:  Fredrik Sterky; Rupali R Bhalerao; Per Unneberg; Bo Segerman; Peter Nilsson; Amy M Brunner; Laurence Charbonnel-Campaa; Jenny Jonsson Lindvall; Karolina Tandre; Steven H Strauss; Björn Sundberg; Petter Gustafsson; Mathias Uhlén; Rishikesh P Bhalerao; Ove Nilsson; Göran Sandberg; Jan Karlsson; Joakim Lundeberg; Stefan Jansson
Journal:  Proc Natl Acad Sci U S A       Date:  2004-09-07       Impact factor: 11.205

Review 2.  MicroRNAs in trees.

Authors:  Ying-Hsuan Sun; Rui Shi; Xing-Hai Zhang; Vincent L Chiang; Ronald R Sederoff
Journal:  Plant Mol Biol       Date:  2011-12-08       Impact factor: 4.076

Review 3.  Plant genome size research: a field in focus.

Authors:  M D Bennett; I J Leitch
Journal:  Ann Bot       Date:  2005-01       Impact factor: 4.357

Review 4.  Genome histories clarify evolution of the expansin superfamily: new insights from the poplar genome and pine ESTs.

Authors:  Javier Sampedro; Robert E Carey; Daniel J Cosgrove
Journal:  J Plant Res       Date:  2006-01-13       Impact factor: 2.629

5.  Members of the LATERAL ORGAN BOUNDARIES DOMAIN transcription factor family are involved in the regulation of secondary growth in Populus.

Authors:  Yordan S Yordanov; Sharon Regan; Victor Busov
Journal:  Plant Cell       Date:  2010-11-19       Impact factor: 11.277

6.  Chromosomal localization of 5S and 18S rDNA in five species of subgenus Strobus and their implications for genome evolution of Pinus.

Authors:  Qing Cai; Daming Zhang; Zhan-Lin Liu; Xiao-Ru Wang
Journal:  Ann Bot       Date:  2006-02-15       Impact factor: 4.357

7.  Nucleotide polymorphism and linkage disequilibrium within and among natural populations of European aspen (Populus tremula L., Salicaceae).

Authors:  Pär K Ingvarsson
Journal:  Genetics       Date:  2004-10-16       Impact factor: 4.562

8.  Characterization of the NADP-malic enzymes in the woody plant Populus trichocarpa.

Authors:  Qiguo Yu; Jinwen Liu; Zhifeng Wang; Jiefei Nai; Mengyan Lü; Xiying Zhou; Yuxiang Cheng
Journal:  Mol Biol Rep       Date:  2012-10-18       Impact factor: 2.316

9.  Association genetics and expression patterns of a CBF4 homolog in Populus under abiotic stress.

Authors:  Ying Li; Baohua Xu; Qingzhang Du; Deqiang Zhang
Journal:  Mol Genet Genomics       Date:  2014-12-07       Impact factor: 3.291

10.  Transcript abundance patterns of Populus C-repeat binding factor2 orthologs and genetic association of PsCBF2 allelic variation with physiological and biochemical traits in response to abiotic stress.

Authors:  Ying Li; Baohua Xu; Qingzhang Du; Deqiang Zhang
Journal:  Planta       Date:  2015-04-28       Impact factor: 4.116

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