Literature DB >> 22161564

MicroRNAs in trees.

Ying-Hsuan Sun1, Rui Shi, Xing-Hai Zhang, Vincent L Chiang, Ronald R Sederoff.   

Abstract

MicroRNAs (miRNAs) are 20-24 nucleotide long molecules processed from a specific class of RNA polymerase II transcripts that mainly regulate the stability of mRNAs containing a complementary sequence by targeted degradation in plants. Many features of tree biology are regulated by miRNAs affecting development, metabolism, adaptation and evolution. MiRNAs may be modified and harnessed for controlled suppression of specific genes to learn about gene function, or for practical applications through genetic engineering. Modified (artificial) miRNAs act as dominant suppressors and are particularly useful in tree genetics because they bypass the generations of inbreeding needed for fixation of recessive mutations. The purpose of this review is to summarize the current status of information on miRNAs in trees and to guide future studies on the role of miRNAs in the biology of woody perennials and to illustrate their utility in directed genetic modification of trees.

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Year:  2011        PMID: 22161564     DOI: 10.1007/s11103-011-9864-z

Source DB:  PubMed          Journal:  Plant Mol Biol        ISSN: 0167-4412            Impact factor:   4.076


  109 in total

1.  Temporal regulation of shoot development in Arabidopsis thaliana by miR156 and its target SPL3.

Authors:  Gang Wu; R Scott Poethig
Journal:  Development       Date:  2006-08-16       Impact factor: 6.868

2.  Computational identification of microRNAs in peach expressed sequence tags and validation of their precise sequences by miR-RACE.

Authors:  Yanping Zhang; Mingliang Yu; Huaping Yu; Jian Han; Changnian Song; Ruijuan Ma; Jinggui Fang
Journal:  Mol Biol Rep       Date:  2011-06-12       Impact factor: 2.316

3.  MicroRNA directs mRNA cleavage of the transcription factor NAC1 to downregulate auxin signals for arabidopsis lateral root development.

Authors:  Hui-Shan Guo; Qi Xie; Ji-Feng Fei; Nam-Hai Chua
Journal:  Plant Cell       Date:  2005-04-13       Impact factor: 11.277

4.  Posttranscriptional induction of two Cu/Zn superoxide dismutase genes in Arabidopsis is mediated by downregulation of miR398 and important for oxidative stress tolerance.

Authors:  Ramanjulu Sunkar; Avnish Kapoor; Jian-Kang Zhu
Journal:  Plant Cell       Date:  2006-07-21       Impact factor: 11.277

5.  Genome-wide profiling of populus small RNAs.

Authors:  Daniel Klevebring; Nathaniel R Street; Noah Fahlgren; Kristin D Kasschau; James C Carrington; Joakim Lundeberg; Stefan Jansson
Journal:  BMC Genomics       Date:  2009-12-20       Impact factor: 3.969

6.  In vivo investigation of the transcription, processing, endonucleolytic activity, and functional relevance of the spatial distribution of a plant miRNA.

Authors:  Eneida Abreu Parizotto; Patrice Dunoyer; Nadia Rahm; Christophe Himber; Olivier Voinnet
Journal:  Genes Dev       Date:  2004-09-01       Impact factor: 11.361

7.  Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa.

Authors:  Ryan D Morin; Gozde Aksay; Elena Dolgosheina; H Alexander Ebhardt; Vincent Magrini; Elaine R Mardis; S Cenk Sahinalp; Peter J Unrau
Journal:  Genome Res       Date:  2008-03-06       Impact factor: 9.043

8.  Endogenous siRNA and miRNA targets identified by sequencing of the Arabidopsis degradome.

Authors:  Charles Addo-Quaye; Tifani W Eshoo; David P Bartel; Michael J Axtell
Journal:  Curr Biol       Date:  2008-05-08       Impact factor: 10.834

9.  The Populus Class III HD ZIP transcription factor POPCORONA affects cell differentiation during secondary growth of woody stems.

Authors:  Juan Du; Eriko Miura; Marcel Robischon; Ciera Martinez; Andrew Groover
Journal:  PLoS One       Date:  2011-02-28       Impact factor: 3.240

10.  ForestTreeDB: a database dedicated to the mining of tree transcriptomes.

Authors:  Nathalie Pavy; James J Johnson; John A Crow; Charles Paule; Timothy Kunau; John MacKay; Ernest F Retzel
Journal:  Nucleic Acids Res       Date:  2006-11-27       Impact factor: 16.971

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  2 in total

1.  Identification and validation of potential conserved microRNAs and their targets in peach (Prunus persica).

Authors:  Zhihong Gao; Xiaoyan Luo; Ting Shi; Bin Cai; Zhen Zhang; Zongming Cheng; Weibing Zhuang
Journal:  Mol Cells       Date:  2012-08-08       Impact factor: 5.034

2.  Sexual dimorphism floral microRNA profiling and target gene expression in andromonoecious poplar (Populus tomentosa).

Authors:  Yuepeng Song; Kaifeng Ma; Dong Ci; Zhiyi Zhang; Deqiang Zhang
Journal:  PLoS One       Date:  2013-05-07       Impact factor: 3.240

  2 in total

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