Literature DB >> 1472058

Escherichia coli tRNA(Asp) recognition mechanism differing from that of the yeast system.

N Nameki1, K Tamura, H Himeno, H Asahara, T Hasegawa, M Shimizu.   

Abstract

Various tRNA transcripts were constructed to study the identity elements of Escherichia coli tRNA(Asp). Base substitutions from G34 to U34 at the first position of the anticodon, and from U35 to A35 at the second, severely impaired the aspartate charging activity. The activity was also decreased, but in a more moderate fashion, by base changes at G2-C71, C36 and C38. Identity nucleotides of tRNA(Asp) are distributed in a different fashion between E. coli and yeast, which occur at the second base pair of the acceptor stem, G10-U25 base pair in the D-stem and 3' half of the anticodon loop.

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Year:  1992        PMID: 1472058     DOI: 10.1016/0006-291x(92)92282-3

Source DB:  PubMed          Journal:  Biochem Biophys Res Commun        ISSN: 0006-291X            Impact factor:   3.575


  13 in total

1.  The structure of an AspRS-tRNA(Asp) complex reveals a tRNA-dependent control mechanism.

Authors:  L Moulinier; S Eiler; G Eriani; J Gangloff; J C Thierry; K Gabriel; W H McClain; D Moras
Journal:  EMBO J       Date:  2001-09-17       Impact factor: 11.598

2.  Single amino acid changes in AspRS reveal alternative routes for expanding its tRNA repertoire in vivo.

Authors:  Franck Martin; Sharief Barends; Gilbert Eriani
Journal:  Nucleic Acids Res       Date:  2004-08-02       Impact factor: 16.971

3.  RNA editing changes the identity of a mitochondrial tRNA in marsupials.

Authors:  G V Börner; M Mörl; A Janke; S Pääbo
Journal:  EMBO J       Date:  1996-11-01       Impact factor: 11.598

4.  The nondiscriminating aspartyl-tRNA synthetase from Helicobacter pylori: anticodon-binding domain mutations that impact tRNA specificity and heterologous toxicity.

Authors:  Pitak Chuawong; Tamara L Hendrickson
Journal:  Biochemistry       Date:  2006-07-04       Impact factor: 3.162

5.  The tRNA specificity of Thermus thermophilus EF-Tu.

Authors:  Haruichi Asahara; Olke C Uhlenbeck
Journal:  Proc Natl Acad Sci U S A       Date:  2002-03-12       Impact factor: 11.205

6.  Recognition of acceptor-stem structure of tRNA(Asp) by Escherichia coli aspartyl-tRNA synthetase.

Authors:  Hyunsic Choi; Kay Gabriel; Jay Schneider; Sharee Otten; William H McClain
Journal:  RNA       Date:  2003-04       Impact factor: 4.942

7.  An aminoacyl-tRNA synthetase-like protein encoded by the Escherichia coli yadB gene glutamylates specifically tRNAAsp.

Authors:  Daniel Y Dubois; Mickaël Blaise; Hubert D Becker; Valérie Campanacci; Gérard Keith; Richard Giegé; Christian Cambillau; Jacques Lapointe; Daniel Kern
Journal:  Proc Natl Acad Sci U S A       Date:  2004-04-19       Impact factor: 11.205

8.  Identity elements of tRNA(Thr) towards Saccharomyces cerevisiae threonyl-tRNA synthetase.

Authors:  N Nameki
Journal:  Nucleic Acids Res       Date:  1995-08-11       Impact factor: 16.971

9.  Identity elements of Saccharomyces cerevisiae tRNA(His).

Authors:  N Nameki; H Asahara; M Shimizu; N Okada; H Himeno
Journal:  Nucleic Acids Res       Date:  1995-02-11       Impact factor: 16.971

10.  Mapping hidden potential identity elements by computing the average discriminating power of individual tRNA positions.

Authors:  Aron Szenes; Gábor Pál
Journal:  DNA Res       Date:  2012-02-28       Impact factor: 4.458

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