Literature DB >> 14719948

Comparison between the geometric and electronic structures and reactivities of [FeNO]7 and [FeO2]8 complexes: a density functional theory study.

Gerhard Schenk1, Monita Y M Pau, Edward I Solomon.   

Abstract

In a previous study, we analyzed the electronic structure of S = 3/2 [FeNO](7) model complexes [Brown et al. J. Am. Chem. Soc. 1995, 117, 715-732]. The combined spectroscopic data and SCF-X alpha-SW electronic structure calculations are best described in terms of Fe(III) (S = 5/2) antiferromagnetically coupled to NO(-) (S = 1). Many nitrosyl derivatives of non-heme iron enzymes have spectroscopic properties similar to those of these model complexes. These NO derivatives can serve as stable analogues of highly labile oxygen intermediates. It is thus essential to establish a reliable density functional theory (DFT) methodology for the geometry and energetics of [FeNO](7) complexes, based on detailed experimental data. This methodology can then be extended to the study of [FeO(2)](8) complexes, followed by investigations into the reaction mechanisms of non-heme iron enzymes. Here, we have used the model complex Fe(Me(3)TACN)(NO)(N(3))(2) as an experimental marker and determined that a pure density functional BP86 with 10% hybrid character and a mixed triple-zeta/double-zeta basis set lead to agreement between experimental and computational data. This methodology is then applied to optimize the hypothetical Fe(Me(3)TACN)(O(2))(N(3))(2) complex, where the NO moiety is replaced by O(2). The main geometric differences are an elongated Fe[bond]O(2) and a steeper Fe[bond]O[bond]O angle in the [FeO(2)](8) complex. The electronic structure of [FeO(2)](8) corresponds to Fe(III) (S = 5/2) antiferromagnetically coupled to O(2)(-) (S = 1/2), and, consistent with the extended bond length, the [FeO(2)](8) unit has only one Fe(III)-O(2)(-) bonding interaction, while the [FeNO](7) unit has both sigma and pi type Fe(III)-NO(-) bonds. This is in agreement with experiment as NO forms a more stable Fe(III)-NO(-) adduct relative to O(2)(-). Although NO is, in fact, harder to reduce, the resultant NO(-) species forms a more stable bond to Fe(III) relative to O(2)(-) due to the different bonding interactions.

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Year:  2004        PMID: 14719948     DOI: 10.1021/ja036715u

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  28 in total

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2.  Structural insights into ligand dynamics: correlated oxygen and picket motion in oxycobalt picket fence porphyrins.

Authors:  Jianfeng Li; Bruce C Noll; Allen G Oliver; W Robert Scheidt
Journal:  J Am Chem Soc       Date:  2012-06-12       Impact factor: 15.419

3.  Spectroscopic and electronic structure study of the enzyme-substrate complex of intradiol dioxygenases: substrate activation by a high-spin ferric non-heme iron site.

Authors:  Monita Y M Pau; Mindy I Davis; Allen M Orville; John D Lipscomb; Edward I Solomon
Journal:  J Am Chem Soc       Date:  2007-01-26       Impact factor: 15.419

4.  Near-IR MCD of the nonheme ferrous active site in naphthalene 1,2-dioxygenase: correlation to crystallography and structural insight into the mechanism of Rieske dioxygenases.

Authors:  Takehiro Ohta; Sarmistha Chakrabarty; John D Lipscomb; Edward I Solomon
Journal:  J Am Chem Soc       Date:  2008-01-12       Impact factor: 15.419

5.  Rate-Determining Attack on Substrate Precedes Rieske Cluster Oxidation during Cis-Dihydroxylation by Benzoate Dioxygenase.

Authors:  Brent S Rivard; Melanie S Rogers; Daniel J Marell; Matthew B Neibergall; Sarmistha Chakrabarty; Christopher J Cramer; John D Lipscomb
Journal:  Biochemistry       Date:  2015-07-21       Impact factor: 3.162

6.  Activation of α-keto acid-dependent dioxygenases: application of an {FeNO}7/{FeO2}8 methodology for characterizing the initial steps of O2 activation.

Authors:  Adrienne R Diebold; Christina D Brown-Marshall; Michael L Neidig; June M Brownlee; Graham R Moran; Edward I Solomon
Journal:  J Am Chem Soc       Date:  2011-10-21       Impact factor: 15.419

7.  Cryoreduction of the NO-adduct of taurine:alpha-ketoglutarate dioxygenase (TauD) yields an elusive {FeNO}(8) species.

Authors:  Shengfa Ye; John C Price; Eric W Barr; Michael T Green; J Martin Bollinger; Carsten Krebs; Frank Neese
Journal:  J Am Chem Soc       Date:  2010-04-07       Impact factor: 15.419

8.  Theoretical study of cyclohexane hydroxylation by three possible isomers of [FeIV(O)(R-TPEN)] 2+: does the pentadentate ligand wrapping around the metal center differently lead to the different stability and reactivity?

Authors:  Yi Wang; Yong Wang; Keli Han
Journal:  J Biol Inorg Chem       Date:  2009-01-27       Impact factor: 3.358

9.  Preparation of non-heme {FeNO}7 models of cysteine dioxygenase: sulfur versus nitrogen ligation and photorelease of nitric oxide.

Authors:  Alison C McQuilken; Yang Ha; Kyle D Sutherlin; Maxime A Siegler; Keith O Hodgson; Britt Hedman; Edward I Solomon; Guy N L Jameson; David P Goldberg
Journal:  J Am Chem Soc       Date:  2013-09-17       Impact factor: 15.419

10.  Novel Approaches for the Accumulation of Oxygenated Intermediates to Multi-Millimolar Concentrations.

Authors:  Carsten Krebs; Laura M K Dassama; Megan L Matthews; Wei Jiang; John C Price; Victoria Korboukh; Ning Li; J Martin Bollinger
Journal:  Coord Chem Rev       Date:  2013-01-01       Impact factor: 22.315

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