Literature DB >> 14704360

Facile methods for generating human somatic cell gene knockouts using recombinant adeno-associated viruses.

Manu Kohli1, Carlo Rago, Christoph Lengauer, Kenneth W Kinzler, Bert Vogelstein.   

Abstract

Emerging evidence suggests that recombinant adeno-associated viral (rAAV) vectors can be used for specific gene targeting in human somatic cells. We have developed an rAAV vector construction procedure employing fusion PCR and a single cloning step that considerably simplifies the knockout process. We demonstrate its utility by disrupting genes at specific positions within human colon cancer cells as well as within immortalized normal epithelial cells. This technology should be broadly applicable to in vitro studies that require the manipulation of the human genome.

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Year:  2004        PMID: 14704360      PMCID: PMC373311          DOI: 10.1093/nar/gnh009

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  20 in total

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Journal:  Nature       Date:  2002-07-11       Impact factor: 49.962

2.  Chimeric nucleases stimulate gene targeting in human cells.

Authors:  Matthew H Porteus; David Baltimore
Journal:  Science       Date:  2003-05-02       Impact factor: 47.728

3.  Computational biology. Counting on the neuron.

Authors:  Marvin Cassman
Journal:  Science       Date:  2003-05-02       Impact factor: 47.728

4.  Efficient gene targeting mediated by adeno-associated virus and DNA double-strand breaks.

Authors:  Matthew H Porteus; Toni Cathomen; Matthew D Weitzman; David Baltimore
Journal:  Mol Cell Biol       Date:  2003-05       Impact factor: 4.272

5.  Induction of an interferon response by RNAi vectors in mammalian cells.

Authors:  Alan J Bridge; Stephanie Pebernard; Annick Ducraux; Anne-Laure Nicoulaz; Richard Iggo
Journal:  Nat Genet       Date:  2003-07       Impact factor: 38.330

Review 6.  Human cell knockouts.

Authors:  Fred Bunz
Journal:  Curr Opin Oncol       Date:  2002-01       Impact factor: 3.645

7.  Use of isogenic human cancer cells for high-throughput screening and drug discovery.

Authors:  C J Torrance; V Agrawal; B Vogelstein; K W Kinzler
Journal:  Nat Biotechnol       Date:  2001-10       Impact factor: 54.908

8.  Activation of the interferon system by short-interfering RNAs.

Authors:  Carol A Sledz; Michelle Holko; Michael J de Veer; Robert H Silverman; Bryan R G Williams
Journal:  Nat Cell Biol       Date:  2003-08-24       Impact factor: 28.824

9.  Targeted transgene insertion into human chromosomes by adeno-associated virus vectors.

Authors:  Roli Hirata; Joel Chamberlain; Rong Dong; David W Russell
Journal:  Nat Biotechnol       Date:  2002-07       Impact factor: 54.908

10.  Development and optimization of a real-time quantitative PCR-based method for the titration of AAV-2 vector stocks.

Authors:  Marlon R Veldwijk; Julian Topaly; Stephanie Laufs; Ulrich R Hengge; Frederik Wenz; W Jens Zeller; Stefan Fruehauf
Journal:  Mol Ther       Date:  2002-08       Impact factor: 11.454

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  81 in total

Review 1.  Delving into somatic variation in sporadic melanoma.

Authors:  Vijay Walia; Euphemia W Mu; Jimmy C Lin; Yardena Samuels
Journal:  Pigment Cell Melanoma Res       Date:  2012-02-13       Impact factor: 4.693

Review 2.  Genome editing with engineered zinc finger nucleases.

Authors:  Fyodor D Urnov; Edward J Rebar; Michael C Holmes; H Steve Zhang; Philip D Gregory
Journal:  Nat Rev Genet       Date:  2010-09       Impact factor: 53.242

3.  Functional genomics, proteomics, and regulatory DNA analysis in isogenic settings using zinc finger nuclease-driven transgenesis into a safe harbor locus in the human genome.

Authors:  Russell C DeKelver; Vivian M Choi; Erica A Moehle; David E Paschon; Dirk Hockemeyer; Sebastiaan H Meijsing; Yasemin Sancak; Xiaoxia Cui; Eveline J Steine; Jeffrey C Miller; Phillip Tam; Victor V Bartsevich; Xiangdong Meng; Igor Rupniewski; Sunita M Gopalan; Helena C Sun; Kathleen J Pitz; Jeremy M Rock; Lei Zhang; Gregory D Davis; Edward J Rebar; Iain M Cheeseman; Keith R Yamamoto; David M Sabatini; Rudolf Jaenisch; Philip D Gregory; Fyodor D Urnov
Journal:  Genome Res       Date:  2010-05-27       Impact factor: 9.043

4.  Human Neuropsychiatric Disease Modeling using Conditional Deletion Reveals Synaptic Transmission Defects Caused by Heterozygous Mutations in NRXN1.

Authors:  ChangHui Pak; Tamas Danko; Yingsha Zhang; Jason Aoto; Garret Anderson; Stephan Maxeiner; Fei Yi; Marius Wernig; Thomas C Südhof
Journal:  Cell Stem Cell       Date:  2015-08-13       Impact factor: 24.633

5.  High efficiency of BRCA1 knockout using rAAV-mediated gene targeting: developing a pig model for breast cancer.

Authors:  Yonglun Luo; Juan Li; Ying Liu; Lin Lin; Yutao Du; Shengting Li; Huanming Yang; Gábor Vajta; Henrik Callesen; Lars Bolund; Charlotte Brandt Sørensen
Journal:  Transgenic Res       Date:  2010-12-22       Impact factor: 2.788

6.  Stability and homogeneity of transgene expression in isogenic cells.

Authors:  Weimin Liu; Yuanzhu Xiong; Manfred Gossen
Journal:  J Mol Med (Berl)       Date:  2005-11-18       Impact factor: 4.599

7.  The colorectal microRNAome.

Authors:  Jordan M Cummins; Yiping He; Rebecca J Leary; Ray Pagliarini; Luis A Diaz; Tobias Sjoblom; Omer Barad; Zvi Bentwich; Anna E Szafranska; Emmanuel Labourier; Christopher K Raymond; Brian S Roberts; Hartmut Juhl; Kenneth W Kinzler; Bert Vogelstein; Victor E Velculescu
Journal:  Proc Natl Acad Sci U S A       Date:  2006-02-27       Impact factor: 11.205

8.  Requirements for Cdk7 in the assembly of Cdk1/cyclin B and activation of Cdk2 revealed by chemical genetics in human cells.

Authors:  Stéphane Larochelle; Karl A Merrick; Marie-Emilie Terret; Lara Wohlbold; Nora M Barboza; Chao Zhang; Kevan M Shokat; Prasad V Jallepalli; Robert P Fisher
Journal:  Mol Cell       Date:  2007-03-23       Impact factor: 17.970

9.  Ku70, an essential gene, modulates the frequency of rAAV-mediated gene targeting in human somatic cells.

Authors:  Farjana J Fattah; Natalie F Lichter; Kazi R Fattah; Sehyun Oh; Eric A Hendrickson
Journal:  Proc Natl Acad Sci U S A       Date:  2008-06-18       Impact factor: 11.205

10.  A role for XLF in DNA repair and recombination in human somatic cells.

Authors:  Farjana Jahan Fattah; Junghun Kweon; Yongbao Wang; Eu Han Lee; Yinan Kan; Natalie Lichter; Natalie Weisensel; Eric A Hendrickson
Journal:  DNA Repair (Amst)       Date:  2014-01-21
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