Literature DB >> 14697763

DNA-cytosine deaminases: from antibody maturation to antiviral defense.

Ashok S Bhagwat1.   

Abstract

The deamination of cytosines in DNA to uracil, thought to be initiated by free water within the cells, is a well studied pathway by which C to T mutations occur. Until recently, this conversion was frequently referred to as being spontaneous because of the involvement of cellular water. The recent discovery of a family of enzymes in mammalian cells that catalyze this reaction was unexpected and has created excitement in at least two areas of biology, immunology and virology. One of these enzymes, activation-induced cytidine deaminase (AID), is required for the final steps in the maturation of antibodies. The key features of this process include the introduction of a wide variety of base substitutions in the immunoglobulin genes and the creation of region-specific double-strand breaks. Another member of this family, Apobec3G, is involved in the mutational inactivation and degradation of the human immunodeficiency virus (HIV-1). Among the many intriguing features of these processes is the likely involvement of the enzyme that is thought to "protect" cellular DNA against the accumulation of uracils, uracil-DNA glycosylase (UDG). It appears that in certain situations, the newly discovered DNA-cytosine deaminases can team up with UDG to extensively mutate and degrade DNA. This article discusses the many questions raised regarding the role of these enzymes in protecting cells against infections, and about their possible roles in genome evolution and carcinogenesis.

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Year:  2004        PMID: 14697763      PMCID: PMC4617312          DOI: 10.1016/j.dnarep.2003.09.008

Source DB:  PubMed          Journal:  DNA Repair (Amst)        ISSN: 1568-7856


  25 in total

1.  An anthropoid-specific locus of orphan C to U RNA-editing enzymes on chromosome 22.

Authors:  Adam Jarmuz; Ann Chester; Jayne Bayliss; Jane Gisbourne; Ian Dunham; James Scott; Naveenan Navaratnam
Journal:  Genomics       Date:  2002-03       Impact factor: 5.736

Review 2.  The molecular basis of somatic hypermutation of immunoglobulin genes.

Authors:  U Storb
Journal:  Curr Opin Immunol       Date:  1996-04       Impact factor: 7.486

3.  Immunoglobulin isotype switching is inhibited and somatic hypermutation perturbed in UNG-deficient mice.

Authors:  Cristina Rada; Gareth T Williams; Hilde Nilsen; Deborah E Barnes; Tomas Lindahl; Michael S Neuberger
Journal:  Curr Biol       Date:  2002-10-15       Impact factor: 10.834

4.  Species-specific exclusion of APOBEC3G from HIV-1 virions by Vif.

Authors:  Roberto Mariani; Darlene Chen; Bärbel Schröfelbauer; Francisco Navarro; Renate König; Brooke Bollman; Carsten Münk; Henrietta Nymark-McMahon; Nathaniel R Landau
Journal:  Cell       Date:  2003-07-11       Impact factor: 41.582

5.  Hot spot focusing of somatic hypermutation in MSH2-deficient mice suggests two stages of mutational targeting.

Authors:  C Rada; M R Ehrenstein; M S Neuberger; C Milstein
Journal:  Immunity       Date:  1998-07       Impact factor: 31.745

6.  Transcription-targeted DNA deamination by the AID antibody diversification enzyme.

Authors:  Jayanta Chaudhuri; Ming Tian; Chan Khuong; Katrin Chua; Eric Pinaud; Frederick W Alt
Journal:  Nature       Date:  2003-04-09       Impact factor: 49.962

7.  Activation-induced cytidine deaminase deaminates deoxycytidine on single-stranded DNA but requires the action of RNase.

Authors:  Ronda Bransteitter; Phuong Pham; Matthew D Scharff; Myron F Goodman
Journal:  Proc Natl Acad Sci U S A       Date:  2003-03-21       Impact factor: 11.205

8.  The cytidine deaminase CEM15 induces hypermutation in newly synthesized HIV-1 DNA.

Authors:  Hui Zhang; Bin Yang; Roger J Pomerantz; Chune Zhang; Shyamala C Arunachalam; Ling Gao
Journal:  Nature       Date:  2003-05-28       Impact factor: 49.962

9.  Increased hypermutation at G and C nucleotides in immunoglobulin variable genes from mice deficient in the MSH2 mismatch repair protein.

Authors:  Q H Phung; D B Winter; A Cranston; R E Tarone; V A Bohr; R Fishel; P J Gearhart
Journal:  J Exp Med       Date:  1998-06-01       Impact factor: 14.307

10.  Constitutive expression of AID leads to tumorigenesis.

Authors:  Il-mi Okazaki; Hiroshi Hiai; Naoki Kakazu; Shuichi Yamada; Masamichi Muramatsu; Kazuo Kinoshita; Tasuku Honjo
Journal:  J Exp Med       Date:  2003-05-05       Impact factor: 14.307

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  10 in total

Review 1.  Evaluation of molecular models for the affinity maturation of antibodies: roles of cytosine deamination by AID and DNA repair.

Authors:  Mala Samaranayake; Janusz M Bujnicki; Michael Carpenter; Ashok S Bhagwat
Journal:  Chem Rev       Date:  2006-02       Impact factor: 60.622

2.  Mutator effects and mutation signatures of editing deaminases produced in bacteria and yeast.

Authors:  A G Lada; C Frahm Krick; S G Kozmin; V I Mayorov; T S Karpova; I B Rogozin; Y I Pavlov
Journal:  Biochemistry (Mosc)       Date:  2011-01       Impact factor: 2.487

Review 3.  Functions and Malfunctions of Mammalian DNA-Cytosine Deaminases.

Authors:  Sachini U Siriwardena; Kang Chen; Ashok S Bhagwat
Journal:  Chem Rev       Date:  2016-09-01       Impact factor: 60.622

4.  High rate of mutation reporter gene inactivation during human T cell proliferation.

Authors:  Aida Gabdoulkhakova; Gunnel Henriksson; Nadezhda Avkhacheva; Alexander Sofin; Anders Bredberg
Journal:  Immunogenetics       Date:  2006-12-19       Impact factor: 2.846

5.  Transcriptional pausing and stalling causes multiple clustered mutations by human activation-induced deaminase.

Authors:  Chandrika Canugovi; Mala Samaranayake; Ashok S Bhagwat
Journal:  FASEB J       Date:  2008-09-04       Impact factor: 5.191

6.  Replication protein A (RPA) hampers the processive action of APOBEC3G cytosine deaminase on single-stranded DNA.

Authors:  Artem G Lada; Irina S-R Waisertreiger; Corinn E Grabow; Aishwarya Prakash; Gloria E O Borgstahl; Igor B Rogozin; Youri I Pavlov
Journal:  PLoS One       Date:  2011-09-15       Impact factor: 3.240

7.  Expression of human AID in yeast induces mutations in context similar to the context of somatic hypermutation at G-C pairs in immunoglobulin genes.

Authors:  Vladimir I Mayorov; Igor B Rogozin; Linda R Adkison; Christin Frahm; Thomas A Kunkel; Youri I Pavlov
Journal:  BMC Immunol       Date:  2005-06-10       Impact factor: 3.615

8.  Sequence-dependent enhancement of hydrolytic deamination of cytosines in DNA by the restriction enzyme PspGI.

Authors:  Michael Carpenter; Pradeep Divvela; Vera Pingoud; Janusz Bujnicki; Ashok S Bhagwat
Journal:  Nucleic Acids Res       Date:  2006-08-07       Impact factor: 16.971

9.  Disruption of Transcriptional Coactivator Sub1 Leads to Genome-Wide Re-distribution of Clustered Mutations Induced by APOBEC in Active Yeast Genes.

Authors:  Artem G Lada; Sergei F Kliver; Alok Dhar; Dmitrii E Polev; Alexey E Masharsky; Igor B Rogozin; Youri I Pavlov
Journal:  PLoS Genet       Date:  2015-05-05       Impact factor: 5.917

Review 10.  Current perspectives on HIV-1 antiretroviral drug resistance.

Authors:  Pinar Iyidogan; Karen S Anderson
Journal:  Viruses       Date:  2014-10-24       Impact factor: 5.048

  10 in total

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