Literature DB >> 14696383

New tools and data for improving structures, using all-atom contacts.

Jane S Richardson1, W Arendall Bryan, David C Richardson.   

Abstract

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Year:  2003        PMID： 14696383     DOI： 10.1016/s0076-6879(03)74018-x

Source DB:  PubMed          Journal:  Methods Enzymol        ISSN： 0076-6879            Impact factor:   1.600


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  9 in total

1.  MOLPROBITY: structure validation and all-atom contact analysis for nucleic acids and their complexes.

Authors:  Ian W Davis; Laura Weston Murray; Jane S Richardson; David C Richardson
Journal:  Nucleic Acids Res       Date:  2004-07-01       Impact factor: 16.971

2.  Structure of the GMPPNP-stabilized NG domain complex of the SRP GTPases Ffh and FtsY.

Authors:  Joseph Gawronski-Salerno; Douglas M Freymann
Journal:  J Struct Biol       Date:  2006-11-03       Impact factor: 2.867

3.  Altered dimer interface decreases stability in an amyloidogenic protein.

Authors:  Elizabeth M Baden; Barbara A L Owen; Francis C Peterson; Brian F Volkman; Marina Ramirez-Alvarado; James R Thompson
Journal:  J Biol Chem       Date:  2008-04-08       Impact factor: 5.157

4.  Structural insights into the role of mutations in amyloidogenesis.

Authors:  Elizabeth M Baden; Edward G Randles; Awo K Aboagye; James R Thompson; Marina Ramirez-Alvarado
Journal:  J Biol Chem       Date:  2008-09-02       Impact factor: 5.157

5.  Structural alterations within native amyloidogenic immunoglobulin light chains.

Authors:  Edward G Randles; James R Thompson; Douglas J Martin; Marina Ramirez-Alvarado
Journal:  J Mol Biol       Date:  2009-04-08       Impact factor: 5.469

6.  Different poses for ligand and chaperone in inhibitor-bound Hsp90 and GRP94: implications for paralog-specific drug design.

Authors:  Robert M Immormino; Louis E Metzger; Patrick N Reardon; D Eric Dollins; Brian S J Blagg; Daniel T Gewirth
Journal:  J Mol Biol       Date:  2009-04-08       Impact factor: 5.469

7.  Superoxide dismutase from the eukaryotic thermophile Alvinella pompejana: structures, stability, mechanism, and insights into amyotrophic lateral sclerosis.

Authors:  David S Shin; Michael Didonato; David P Barondeau; Greg L Hura; Chiharu Hitomi; J Andrew Berglund; Elizabeth D Getzoff; S Craig Cary; John A Tainer
Journal:  J Mol Biol       Date:  2008-11-25       Impact factor: 5.469

8.  An in-silico approach to develop of a multi-epitope vaccine candidate against SARS-CoV-2 envelope (E) protein.

Authors:  Fatemeh Ghafouri; Reza Ahangari Cohan; Farshid Noorbakhsh; Hilda Samimi; Vahid Haghpanah
Journal:  Res Sq       Date:  2020-05-20

9.  MolProbity: all-atom contacts and structure validation for proteins and nucleic acids.

Authors:  Ian W Davis; Andrew Leaver-Fay; Vincent B Chen; Jeremy N Block; Gary J Kapral; Xueyi Wang; Laura W Murray; W Bryan Arendall; Jack Snoeyink; Jane S Richardson; David C Richardson
Journal:  Nucleic Acids Res       Date:  2007-04-22       Impact factor: 16.971
  9 in total

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