Literature DB >> 18768467

Structural insights into the role of mutations in amyloidogenesis.

Elizabeth M Baden1, Edward G Randles, Awo K Aboagye, James R Thompson, Marina Ramirez-Alvarado.   

Abstract

Mechanisms of amyloidogenesis are not well understood, including potential structural contributions of mutations in the process. Our previous research indicated that the dimer interface of amyloidogenic immunoglobulin light chain protein AL-09 is twisted 90 degrees relative to the protein from its germline sequence, kappaI O18/O8. Here we report a systematic restoration of AL-09 to its germline sequence by mutating the non-conservative somatic mutations located in the light chain dimer interface. Among these mutants, we find a correlation between increased thermodynamic stability and an increase in the lag time for fibril formation. The restorative mutant AL-09 H87Y completes the trifecta and restores the dimer interface observed in kappaI O18/O8, emphasizing the potential importance of the structural integrity of these proteins to protect against amyloidogenicity. We also find that adding amyloidogenic mutations into the germline protein illustrates mutational cooperativity in promoting amyloidogenesis.

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Year:  2008        PMID: 18768467      PMCID: PMC2576559          DOI: 10.1074/jbc.M804822200

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  26 in total

1.  Thermodynamic modulation of light chain amyloid fibril formation.

Authors:  Y Kim; J S Wall; J Meyer; C Murphy; T W Randolph; M C Manning; A Solomon; J F Carpenter
Journal:  J Biol Chem       Date:  2000-01-21       Impact factor: 5.157

2.  The finer things in X-ray diffraction data collection.

Authors:  J W Pflugrath
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1999-10

3.  SFCHECK: a unified set of procedures for evaluating the quality of macromolecular structure-factor data and their agreement with the atomic model.

Authors:  A A Vaguine; J Richelle; S J Wodak
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1999-01-01

4.  Inhibition of amyloid fiber assembly by both BiP and its target peptide.

Authors:  P D Davis; R Raffen; L J Dul; M S Vogen; K E Williamson; J F Stevens; Y Argon
Journal:  Immunity       Date:  2000-10       Impact factor: 31.745

5.  Pushing the boundaries of molecular replacement with maximum likelihood.

Authors:  R J Read
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2001-09-21

6.  New tools and data for improving structures, using all-atom contacts.

Authors:  Jane S Richardson; W Arendall Bryan; David C Richardson
Journal:  Methods Enzymol       Date:  2003       Impact factor: 1.600

7.  Likelihood-enhanced fast rotation functions.

Authors:  Laurent C Storoni; Airlie J McCoy; Randy J Read
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2004-02-25

8.  Use of TLS parameters to model anisotropic displacements in macromolecular refinement.

Authors:  M D Winn; M N Isupov; G N Murshudov
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2001-01

9.  Thermodynamic instability of human lambda 6 light chains: correlation with fibrillogenicity.

Authors:  J Wall; M Schell; C Murphy; R Hrncic; F J Stevens; A Solomon
Journal:  Biochemistry       Date:  1999-10-19       Impact factor: 3.162

10.  Clonal immunoglobulin light chain variable region germline gene use in AL amyloidosis: association with dominant amyloid-related organ involvement and survival after stem cell transplantation.

Authors:  R L Comenzo; J Wally; G Kica; J Murray; T Ericsson; M Skinner; Y Zhang
Journal:  Br J Haematol       Date:  1999-09       Impact factor: 6.998

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  32 in total

1.  Potential aggregation-prone regions in complementarity-determining regions of antibodies and their contribution towards antigen recognition: a computational analysis.

Authors:  Xiaoling Wang; Satish K Singh; Sandeep Kumar
Journal:  Pharm Res       Date:  2010-04-27       Impact factor: 4.200

2.  Comparison of amyloid fibril formation by two closely related immunoglobulin light chain variable domains.

Authors:  Douglas J Martin; Marina Ramirez-Alvarado
Journal:  Amyloid       Date:  2010-09       Impact factor: 7.141

3.  Mutations can cause light chains to be too stable or too unstable to form amyloid fibrils.

Authors:  Marta Marin-Argany; Jofre Güell-Bosch; Luis M Blancas-Mejía; Sandra Villegas; Marina Ramirez-Alvarado
Journal:  Protein Sci       Date:  2015-09-07       Impact factor: 6.725

4.  Effect of single point mutations in a form of systemic amyloidosis.

Authors:  Manikanthan Bhavaraju; Ulrich H E Hansmann
Journal:  Protein Sci       Date:  2015-07-14       Impact factor: 6.725

5.  Site-directed mutagenesis reveals regions implicated in the stability and fiber formation of human λ3r light chains.

Authors:  Miryam I Villalba; Juan C Canul-Tec; Oscar D Luna-Martínez; Rosalba Sánchez-Alcalá; Timoteo Olamendi-Portugal; Enrique Rudiño-Piñera; Sonia Rojas; Rosana Sánchez-López; Daniel A Fernández-Velasco; Baltazar Becerril
Journal:  J Biol Chem       Date:  2014-12-11       Impact factor: 5.157

6.  Identification of two principal amyloid-driving segments in variable domains of Ig light chains in systemic light-chain amyloidosis.

Authors:  Boris Brumshtein; Shannon R Esswein; Michael R Sawaya; Gregory Rosenberg; Alan T Ly; Meytal Landau; David S Eisenberg
Journal:  J Biol Chem       Date:  2018-10-24       Impact factor: 5.157

7.  Differences in Protein Concentration Dependence for Nucleation and Elongation in Light Chain Amyloid Formation.

Authors:  Luis M Blancas-Mejía; Pinaki Misra; Marina Ramirez-Alvarado
Journal:  Biochemistry       Date:  2017-01-24       Impact factor: 3.162

8.  Tyrosine residues mediate fibril formation in a dynamic light chain dimer interface.

Authors:  Ara Celi DiCostanzo; James R Thompson; Francis C Peterson; Brian F Volkman; Marina Ramirez-Alvarado
Journal:  J Biol Chem       Date:  2012-06-27       Impact factor: 5.157

Review 9.  Systemic amyloidoses.

Authors:  Luis M Blancas-Mejía; Marina Ramirez-Alvarado
Journal:  Annu Rev Biochem       Date:  2013-02-28       Impact factor: 23.643

10.  Mutations in specific structural regions of immunoglobulin light chains are associated with free light chain levels in patients with AL amyloidosis.

Authors:  Tanya L Poshusta; Laura A Sikkink; Nelson Leung; Raynell J Clark; Angela Dispenzieri; Marina Ramirez-Alvarado
Journal:  PLoS One       Date:  2009-04-13       Impact factor: 3.240

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