Literature DB >> 18400753

Altered dimer interface decreases stability in an amyloidogenic protein.

Elizabeth M Baden1, Barbara A L Owen, Francis C Peterson, Brian F Volkman, Marina Ramirez-Alvarado, James R Thompson.   

Abstract

Amyloidoses are devastating and currently incurable diseases in which the process of amyloid formation causes fatal cellular and organ damage. The molecular mechanisms underlying amyloidoses are not well known. In this study, we address the structural basis of immunoglobulin light chain amyloidosis, which results from deposition of light chains produced by clonal plasma cells. We compare light chain amyloidosis protein AL-09 to its wild-type counterpart, the kappaI O18/O8 light chain germline. Crystallographic studies indicate that both proteins form dimers. However, AL-09 has an altered dimer interface that is rotated 90 degrees from the kappaI O18/O8 dimer interface. The three non-conservative mutations in AL-09 are located within the dimer interface, consistent with their role in the decreased stability of this amyloidogenic protein. Moreover, AL-09 forms amyloid fibrils more quickly than kappaI O18/O8 in vitro. These results support the notion that the increased stability of the monomer and delayed fibril formation, together with a properly formed dimer, may be protective against amyloidogenesis. This could open a new direction into rational drug design for amyloidogenic proteins.

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Year:  2008        PMID: 18400753      PMCID: PMC2414275          DOI: 10.1074/jbc.M705347200

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  45 in total

1.  Structural relationship of kappa-type light chains with AL amyloidosis: multiple deletions found in a VkappaIV protein.

Authors:  M A Alim; S Yamaki; M S Hossain; K Takeda; M Kozima; T Izumi; I Takashi; T Shinoda
Journal:  Clin Exp Immunol       Date:  1999-12       Impact factor: 4.330

Review 2.  Amyloid diseases: abnormal protein aggregation in neurodegeneration.

Authors:  E H Koo; P T Lansbury; J W Kelly
Journal:  Proc Natl Acad Sci U S A       Date:  1999-08-31       Impact factor: 11.205

Review 3.  Protein misfolding, evolution and disease.

Authors:  C M Dobson
Journal:  Trends Biochem Sci       Date:  1999-09       Impact factor: 13.807

4.  Thermodynamic modulation of light chain amyloid fibril formation.

Authors:  Y Kim; J S Wall; J Meyer; C Murphy; T W Randolph; M C Manning; A Solomon; J F Carpenter
Journal:  J Biol Chem       Date:  2000-01-21       Impact factor: 5.157

5.  SFCHECK: a unified set of procedures for evaluating the quality of macromolecular structure-factor data and their agreement with the atomic model.

Authors:  A A Vaguine; J Richelle; S J Wodak
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1999-01-01

6.  Rapid folding with and without populated intermediates in the homologous four-helix proteins Im7 and Im9.

Authors:  N Ferguson; A P Capaldi; R James; C Kleanthous; S E Radford
Journal:  J Mol Biol       Date:  1999-03-12       Impact factor: 5.469

7.  Estimation of the number of alpha-helical and beta-strand segments in proteins using circular dichroism spectroscopy.

Authors:  N Sreerama; S Y Venyaminov; R W Woody
Journal:  Protein Sci       Date:  1999-02       Impact factor: 6.725

8.  The structure of an entire noncovalent immunoglobulin kappa light-chain dimer (Bence-Jones protein) reveals a weak and unusual constant domains association.

Authors:  A Roussel; S Spinelli; S Déret; J Navaza; P Aucouturier; C Cambillau
Journal:  Eur J Biochem       Date:  1999-02

9.  Tertiary structure of human lambda 6 light chains.

Authors:  P R Pokkuluri; A Solomon; D T Weiss; F J Stevens; M Schiffer
Journal:  Amyloid       Date:  1999-09       Impact factor: 7.141

10.  Thermodynamic instability of human lambda 6 light chains: correlation with fibrillogenicity.

Authors:  J Wall; M Schell; C Murphy; R Hrncic; F J Stevens; A Solomon
Journal:  Biochemistry       Date:  1999-10-19       Impact factor: 3.162

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  55 in total

1.  Comparison of amyloid fibril formation by two closely related immunoglobulin light chain variable domains.

Authors:  Douglas J Martin; Marina Ramirez-Alvarado
Journal:  Amyloid       Date:  2010-09       Impact factor: 7.141

2.  Mutations can cause light chains to be too stable or too unstable to form amyloid fibrils.

Authors:  Marta Marin-Argany; Jofre Güell-Bosch; Luis M Blancas-Mejía; Sandra Villegas; Marina Ramirez-Alvarado
Journal:  Protein Sci       Date:  2015-09-07       Impact factor: 6.725

3.  Structural insights into the role of mutations in amyloidogenesis.

Authors:  Elizabeth M Baden; Edward G Randles; Awo K Aboagye; James R Thompson; Marina Ramirez-Alvarado
Journal:  J Biol Chem       Date:  2008-09-02       Impact factor: 5.157

4.  Duplication of the class I cytosolic small heat shock protein gene and potential functional divergence revealed by sequence variations flanking the {alpha}-crystallin domain in the genus Rhododendron (Ericaceae).

Authors:  Pei-Chun Liao; Tsan-Piao Lin; Wei-Chieh Lan; Jeng-Der Chung; Shih-Ying Hwang
Journal:  Ann Bot       Date:  2010-01       Impact factor: 4.357

5.  AL-Base: a visual platform analysis tool for the study of amyloidogenic immunoglobulin light chain sequences.

Authors:  Kip Bodi; Tatiana Prokaeva; Brian Spencer; Maurya Eberhard; Lawreen H Connors; David C Seldin
Journal:  Amyloid       Date:  2009-03       Impact factor: 7.141

Review 6.  Systemic amyloidoses.

Authors:  Luis M Blancas-Mejía; Marina Ramirez-Alvarado
Journal:  Annu Rev Biochem       Date:  2013-02-28       Impact factor: 23.643

7.  The Kinetic Stability of a Full-Length Antibody Light Chain Dimer Determines whether Endoproteolysis Can Release Amyloidogenic Variable Domains.

Authors:  Gareth J Morgan; Jeffery W Kelly
Journal:  J Mol Biol       Date:  2016-08-26       Impact factor: 5.469

8.  Structural and Functional Highlights of Vacuolar Soluble Protein 1 from Pathogen Trypanosoma brucei brucei.

Authors:  Abhishek Jamwal; Adam R Round; Ludovic Bannwarth; Catherine Venien-Bryan; Hassan Belrhali; Manickam Yogavel; Amit Sharma
Journal:  J Biol Chem       Date:  2015-10-22       Impact factor: 5.157

9.  Mutations in specific structural regions of immunoglobulin light chains are associated with free light chain levels in patients with AL amyloidosis.

Authors:  Tanya L Poshusta; Laura A Sikkink; Nelson Leung; Raynell J Clark; Angela Dispenzieri; Marina Ramirez-Alvarado
Journal:  PLoS One       Date:  2009-04-13       Impact factor: 3.240

10.  Amyloidogenic regions and interaction surfaces overlap in globular proteins related to conformational diseases.

Authors:  Virginia Castillo; Salvador Ventura
Journal:  PLoS Comput Biol       Date:  2009-08-21       Impact factor: 4.475

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