Literature DB >> 14695281

Phosphorylation-dependent changes in structure and dynamics in ERK2 detected by SDSL and EPR.

Andrew N Hoofnagle1, James W Stoner, Thomas Lee, Sandra S Eaton, Natalie G Ahn.   

Abstract

Mitogen-activated protein kinases are regulated by occupancy at two phosphorylation sites near the active site cleft. Previous studies using hydrogen exchange to investigate the canonical mitogen-activated protein kinase, extracellular signal-regulated protein kinase-2, have shown that phosphorylation alters backbone conformational mobility >10 A distal to the site of phosphorylation, including decreased mobility within amino acids 102-105 and increased mobility within 108-109. To further describe changes after enzyme activation, site-directed spin labeling at amino acids 101, 105-109, 111, 112 and electron paramagnetic resonance spectroscopy were used to investigate this region. The anisotropic hyperfine splitting of the spin labels in glassy samples was unchanged by phosphorylation, consistent with previous crystallographic studies that indicate no structural change in this region. At positions 101, 111, and 112, the mobility of the spin label was unchanged by diphosphorylation, consistent with little or no conformational change. However, diphosphorylation caused small but significant changes in rotational diffusion rates at positions 105-108 and altered proportions of probe in a motionally constrained state at positions 105, 107, and 109. Thus, electron paramagnetic resonance indicates reproducible changes in nanosecond side-chain mobilities at specific residues within the interdomain region, far from the site of phosphorylation and conformational change.

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Year:  2004        PMID: 14695281      PMCID: PMC1303804          DOI: 10.1016/S0006-3495(04)74115-6

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  40 in total

1.  Site-directed spin labeling of a bacterial chemoreceptor reveals a dynamic, loosely packed transmembrane domain.

Authors:  Alexander Barnakov; Christian Altenbach; Ludmila Barnakova; Wayne L Hubbell; Gerald L Hazelbauer
Journal:  Protein Sci       Date:  2002-06       Impact factor: 6.725

Review 2.  Protein analysis by hydrogen exchange mass spectrometry.

Authors:  Andrew N Hoofnagle; Katheryn A Resing; Natalie G Ahn
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Authors:  Linda Columbus; Wayne L Hubbell
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4.  Structure of a peptide inhibitor bound to the catalytic subunit of cyclic adenosine monophosphate-dependent protein kinase.

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Journal:  Science       Date:  1991-07-26       Impact factor: 47.728

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Authors:  S Cox; E Radzio-Andzelm; S S Taylor
Journal:  Curr Opin Struct Biol       Date:  1994-12       Impact factor: 6.809

6.  Insights into autoregulation from the crystal structure of twitchin kinase.

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Journal:  Nature       Date:  1994-06-16       Impact factor: 49.962

7.  Regulation and properties of extracellular signal-regulated protein kinases 1 and 2 in vitro.

Authors:  D J Robbins; E Zhen; H Owaki; C A Vanderbilt; D Ebert; T D Geppert; M H Cobb
Journal:  J Biol Chem       Date:  1993-03-05       Impact factor: 5.157

Review 8.  Active and inactive protein kinases: structural basis for regulation.

Authors:  L N Johnson; M E Noble; D J Owen
Journal:  Cell       Date:  1996-04-19       Impact factor: 41.582

9.  Solution structure of the cAMP-dependent protein kinase catalytic subunit and its contraction upon binding the protein kinase inhibitor peptide.

Authors:  G A Olah; R D Mitchell; T R Sosnick; D A Walsh; J Trewhella
Journal:  Biochemistry       Date:  1993-04-13       Impact factor: 3.162

10.  Atomic structure of the MAP kinase ERK2 at 2.3 A resolution.

Authors:  F Zhang; A Strand; D Robbins; M H Cobb; E J Goldsmith
Journal:  Nature       Date:  1994-02-24       Impact factor: 49.962

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  8 in total

1.  Quantitative analysis of ERK2 interactions with substrate proteins: roles for kinase docking domains and activity in determining binding affinity.

Authors:  Kimberly A Burkhard; Fengming Chen; Paul Shapiro
Journal:  J Biol Chem       Date:  2010-11-22       Impact factor: 5.157

2.  Analysis of MAP kinases by hydrogen exchange mass spectrometry.

Authors:  Kevin M Sours; Natalie G Ahn
Journal:  Methods Mol Biol       Date:  2010

3.  Distinct patterns of activation-dependent changes in conformational mobility between ERK1 and ERK2.

Authors:  Adam Y Ring; Kevin M Sours; Thomas Lee; Natalie G Ahn
Journal:  Int J Mass Spectrom       Date:  2011-04       Impact factor: 1.986

4.  Phosphorylation releases constraints to domain motion in ERK2.

Authors:  Yao Xiao; Thomas Lee; Michael Parker Latham; Lisa Rose Warner; Akiko Tanimoto; Arthur Pardi; Natalie G Ahn
Journal:  Proc Natl Acad Sci U S A       Date:  2014-02-03       Impact factor: 11.205

5.  Effect of Phosphorylation on a Human-like Osteopontin Peptide.

Authors:  Samuel Lenton; Marco Grimaldo; Felix Roosen-Runge; Frank Schreiber; Tommy Nylander; Roger Clegg; Carl Holt; Michael Härtlein; Victoria García Sakai; Tilo Seydel; Susana C Marujo Teixeira
Journal:  Biophys J       Date:  2017-04-25       Impact factor: 4.033

6.  Hydrogen-exchange mass spectrometry reveals activation-induced changes in the conformational mobility of p38alpha MAP kinase.

Authors:  Kevin M Sours; Stan C Kwok; Thami Rachidi; Thomas Lee; Adam Ring; Andrew N Hoofnagle; Katheryn A Resing; Natalie G Ahn
Journal:  J Mol Biol       Date:  2008-04-25       Impact factor: 5.469

7.  Extracellular-regulated kinase 2 is activated by the enhancement of hinge flexibility.

Authors:  Kevin M Sours; Yao Xiao; Natalie G Ahn
Journal:  J Mol Biol       Date:  2014-02-15       Impact factor: 5.469

8.  A Putative Mechanism of Age-Related Synaptic Dysfunction Based on the Impact of IGF-1 Receptor Signaling on Synaptic CaMKIIα Phosphorylation.

Authors:  Olalekan M Ogundele; Joaquin Pardo; Joseph Francis; Rodolfo G Goya; Charles C Lee
Journal:  Front Neuroanat       Date:  2018-05-14       Impact factor: 3.856

  8 in total

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