Literature DB >> 20811987

Analysis of MAP kinases by hydrogen exchange mass spectrometry.

Kevin M Sours1, Natalie G Ahn.   

Abstract

Hydrogen exchange mass spectrometry (HX-MS) is an experimental technique that can be used to -examine solvent accessibility and conformational mobility in biological macromolecules. This chapter summarizes studies using HX-MS to examine the regulation of conformation, protein mobility, and ligand binding to MAP kinases. We describe the planning and design of HX-MS experiments, strategies for data analysis and interpretation, and available software.

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Year:  2010        PMID: 20811987      PMCID: PMC3252998          DOI: 10.1007/978-1-60761-795-2_14

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  22 in total

1.  Probability-based protein identification by searching sequence databases using mass spectrometry data.

Authors:  D N Perkins; D J Pappin; D M Creasy; J S Cottrell
Journal:  Electrophoresis       Date:  1999-12       Impact factor: 3.535

Review 2.  Protein analysis by hydrogen exchange mass spectrometry.

Authors:  Andrew N Hoofnagle; Katheryn A Resing; Natalie G Ahn
Journal:  Annu Rev Biophys Biomol Struct       Date:  2003-02-18

3.  Phosphorylation-dependent changes in structure and dynamics in ERK2 detected by SDSL and EPR.

Authors:  Andrew N Hoofnagle; James W Stoner; Thomas Lee; Sandra S Eaton; Natalie G Ahn
Journal:  Biophys J       Date:  2004-01       Impact factor: 4.033

4.  Use of different proteases working in acidic conditions to improve sequence coverage and resolution in hydrogen/deuterium exchange of large proteins.

Authors:  Laetitia Cravello; David Lascoux; Eric Forest
Journal:  Rapid Commun Mass Spectrom       Date:  2003       Impact factor: 2.419

5.  Deuterium exchange mass spectrometry as a probe of protein kinase activation. Analysis of wild-type and constitutively active mutants of MAP kinase kinase-1.

Authors:  K A Resing; N G Ahn
Journal:  Biochemistry       Date:  1998-01-13       Impact factor: 3.162

6.  Mass spectrometric measurement of protein amide hydrogen exchange rates of apo- and holo-myoglobin.

Authors:  R S Johnson; K A Walsh
Journal:  Protein Sci       Date:  1994-12       Impact factor: 6.725

7.  Primary structure effects on peptide group hydrogen exchange.

Authors:  Y Bai; J S Milne; L Mayne; S W Englander
Journal:  Proteins       Date:  1993-09

8.  Determination of amide hydrogen exchange by mass spectrometry: a new tool for protein structure elucidation.

Authors:  Z Zhang; D L Smith
Journal:  Protein Sci       Date:  1993-04       Impact factor: 6.725

9.  Docking motif interactions in MAP kinases revealed by hydrogen exchange mass spectrometry.

Authors:  Thomas Lee; Andrew N Hoofnagle; Yukihito Kabuyama; James Stroud; Xiaoshan Min; Elizabeth J Goldsmith; Lin Chen; Katheryn A Resing; Natalie G Ahn
Journal:  Mol Cell       Date:  2004-04-09       Impact factor: 17.970

10.  Hydra: software for tailored processing of H/D exchange data from MS or tandem MS analyses.

Authors:  Gordon W Slysz; Charles A H Baker; Benjamin M Bozsa; Anthony Dang; Andrew J Percy; Melissa Bennett; David C Schriemer
Journal:  BMC Bioinformatics       Date:  2009-05-27       Impact factor: 3.169

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  3 in total

1.  The substrate-binding cap of the UDP-diacylglucosamine pyrophosphatase LpxH is highly flexible, enabling facile substrate binding and product release.

Authors:  Heather O Bohl; Pek Ieong; John K Lee; Thomas Lee; Jayakanth Kankanala; Ke Shi; Özlem Demir; Kayo Kurahashi; Rommie E Amaro; Zhengqiang Wang; Hideki Aihara
Journal:  J Biol Chem       Date:  2018-04-06       Impact factor: 5.486

2.  DNA-mediated association of two histone-bound complexes of yeast Chromatin Assembly Factor-1 (CAF-1) drives tetrasome assembly in the wake of DNA replication.

Authors:  Francesca Mattiroli; Yajie Gu; Tejas Yadav; Jeremy L Balsbaugh; Michael R Harris; Eileen S Findlay; Yang Liu; Catherine A Radebaugh; Laurie A Stargell; Natalie G Ahn; Iestyn Whitehouse; Karolin Luger
Journal:  Elife       Date:  2017-03-18       Impact factor: 8.140

3.  The Cac2 subunit is essential for productive histone binding and nucleosome assembly in CAF-1.

Authors:  Francesca Mattiroli; Yajie Gu; Jeremy L Balsbaugh; Natalie G Ahn; Karolin Luger
Journal:  Sci Rep       Date:  2017-04-18       Impact factor: 4.379

  3 in total

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