Literature DB >> 12176845

The EBI SRS server-new features.

Evgeny M Zdobnov1, Rodrigo Lopez, Rolf Apweiler, Thure Etzold.   

Abstract

MOTIVATION: Here we report on recent developments at the EBI SRS server (http://srs.ebi.ac.uk). SRS has become an integration system for both data retrieval and sequence analysis applications. The EBI SRS server is a primary gateway to major databases in the field of molecular biology produced and supported at EBI as well as European public access point to the MEDLINE database provided by US National Library of Medicine (NLM). It is a reference server for latest developments in data and application integration. The new additions include: concept of virtual databases, integration of XML databases like the Integrated Resource of Protein Domains and Functional Sites (InterPro), Gene Ontology (GO), MEDLINE, Metabolic pathways, etc., user friendly data representation in 'Nice views', SRSQuickSearch bookmarklets. AVAILABILITY: SRS6 is a licensed product of LION Bioscience AG freely available for academics. The EBI SRS server (http://srs.ebi.ac.uk) is a free central resource for molecular biology data as well as a reference server for the latest developments in data integration.

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Mesh:

Year:  2002        PMID: 12176845     DOI: 10.1093/bioinformatics/18.8.1149

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  25 in total

1.  The Peptaibol Database: a database for sequences and structures of naturally occurring peptaibols.

Authors:  Lee Whitmore; B A Wallace
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

2.  The EMBL Nucleotide Sequence Database.

Authors:  Tamara Kulikova; Philippe Aldebert; Nicola Althorpe; Wendy Baker; Kirsty Bates; Paul Browne; Alexandra van den Broek; Guy Cochrane; Karyn Duggan; Ruth Eberhardt; Nadeem Faruque; Maria Garcia-Pastor; Nicola Harte; Carola Kanz; Rasko Leinonen; Quan Lin; Vincent Lombard; Rodrigo Lopez; Renato Mancuso; Michelle McHale; Francesco Nardone; Ville Silventoinen; Peter Stoehr; Guenter Stoesser; Mary Ann Tuli; Katerina Tzouvara; Robert Vaughan; Dan Wu; Weimin Zhu; Rolf Apweiler
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

3.  EnsMart: a generic system for fast and flexible access to biological data.

Authors:  Arek Kasprzyk; Damian Keefe; Damian Smedley; Darin London; William Spooner; Craig Melsopp; Martin Hammond; Philippe Rocca-Serra; Tony Cox; Ewan Birney
Journal:  Genome Res       Date:  2004-01       Impact factor: 9.043

4.  The RESID Database of Protein Modifications: 2003 developments.

Authors:  John S Garavelli
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

5.  Improvements to CluSTr: the database of SWISS-PROT+TrEMBL protein clusters.

Authors:  E V Kriventseva; F Servant; R Apweiler
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

6.  The EMBL Nucleotide Sequence Database: major new developments.

Authors:  Guenter Stoesser; Wendy Baker; Alexandra van den Broek; Maria Garcia-Pastor; Carola Kanz; Tamara Kulikova; Rasko Leinonen; Quan Lin; Vincent Lombard; Rodrigo Lopez; Renato Mancuso; Francesco Nardone; Peter Stoehr; Mary Ann Tuli; Katerina Tzouvara; Robert Vaughan
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

7.  rSNP_Guide, a database system for analysis of transcription factor binding to DNA with variations: application to genome annotation.

Authors:  Julia V Ponomarenko; Tatyana I Merkulova; Galina V Orlova; Oleg N Fokin; Elena V Gorshkova; Anatoly S Frolov; Vadim P Valuev; Mikhail P Ponomarenko
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

8.  The European Bioinformatics Institute's data resources.

Authors:  Catherine Brooksbank; Evelyn Camon; Midori A Harris; Michele Magrane; Maria Jesus Martin; Nicola Mulder; Claire O'Donovan; Helen Parkinson; Mary Ann Tuli; Rolf Apweiler; Ewan Birney; Alvis Brazma; Kim Henrick; Rodrigo Lopez; Guenter Stoesser; Peter Stoehr; Graham Cameron
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

9.  HGVbase: a curated resource describing human DNA variation and phenotype relationships.

Authors:  D Fredman; G Munns; D Rios; F Sjöholm; M Siegfried; B Lenhard; H Lehväslaiho; A J Brookes
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

10.  The Gene Ontology Annotation (GOA) Database: sharing knowledge in Uniprot with Gene Ontology.

Authors:  Evelyn Camon; Michele Magrane; Daniel Barrell; Vivian Lee; Emily Dimmer; John Maslen; David Binns; Nicola Harte; Rodrigo Lopez; Rolf Apweiler
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

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