Literature DB >> 14681483

Hembase: browser and genome portal for hematology and erythroid biology.

Sung-Ho Goh1, Y Terry Lee, Gerard G Bouffard, Jeffery L Miller.   

Abstract

Hembase (http://hembase.niddk.nih.gov) is an integrated browser and genome portal designed for web-based examination of the human erythroid transcriptome. To date, Hembase contains 15,752 entries from erythroblast Expressed Sequenced Tags (ESTs) and 380 referenced genes relevant for erythropoiesis. The database is organized to provide a cytogenetic band position, a unique name as well as a concise annotation for each entry. Search queries may be performed by name, keyword or cytogenetic location. Search results are linked to primary sequence data and three major human genome browsers for access to information considered current at the time of each search. Hembase provides interested scientists and clinical hematologists with a genome-based approach toward the study of erythroid biology.

Entities:  

Mesh:

Year:  2004        PMID: 14681483      PMCID: PMC308863          DOI: 10.1093/nar/gkh129

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  8 in total

1.  RefSeq and LocusLink: NCBI gene-centered resources.

Authors:  K D Pruitt; D R Maglott
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

2.  BLAT--the BLAST-like alignment tool.

Authors:  W James Kent
Journal:  Genome Res       Date:  2002-04       Impact factor: 9.043

3.  Ensembl 2002: accommodating comparative genomics.

Authors:  M Clamp; D Andrews; D Barker; P Bevan; G Cameron; Y Chen; L Clark; T Cox; J Cuff; V Curwen; T Down; R Durbin; E Eyras; J Gilbert; M Hammond; T Hubbard; A Kasprzyk; D Keefe; H Lehvaslaiho; V Iyer; C Melsopp; E Mongin; R Pettett; S Potter; A Rust; E Schmidt; S Searle; G Slater; J Smith; W Spooner; A Stabenau; J Stalker; E Stupka; A Ureta-Vidal; I Vastrik; E Birney
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

4.  The UCSC Genome Browser Database.

Authors:  D Karolchik; R Baertsch; M Diekhans; T S Furey; A Hinrichs; Y T Lu; K M Roskin; M Schwartz; C W Sugnet; D J Thomas; R J Weber; D Haussler; W J Kent
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

5.  GenBank.

Authors:  Dennis A Benson; Ilene Karsch-Mizrachi; David J Lipman; James Ostell; David L Wheeler
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

6.  Basic local alignment search tool.

Authors:  S F Altschul; W Gish; W Miller; E W Myers; D J Lipman
Journal:  J Mol Biol       Date:  1990-10-05       Impact factor: 5.469

7.  Gene expression in proliferating human erythroid cells.

Authors:  A N Gubin; J M Njoroge; G G Bouffard; J L Miller
Journal:  Genomics       Date:  1999-07-15       Impact factor: 5.736

8.  Database resources of the National Center for Biotechnology.

Authors:  David L Wheeler; Deanna M Church; Scott Federhen; Alex E Lash; Thomas L Madden; Joan U Pontius; Gregory D Schuler; Lynn M Schriml; Edwin Sequeira; Tatiana A Tatusova; Lukas Wagner
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

  8 in total
  14 in total

1.  Regulatory network inferred using expression data of small sample size: application and validation in erythroid system.

Authors:  Fan Zhu; Lihong Shi; James Douglas Engel; Yuanfang Guan
Journal:  Bioinformatics       Date:  2015-04-02       Impact factor: 6.937

2.  Modeling dynamic functional relationship networks and application to ex vivo human erythroid differentiation.

Authors:  Fan Zhu; Lihong Shi; Hongdong Li; Ridvan Eksi; James Douglas Engel; Yuanfang Guan
Journal:  Bioinformatics       Date:  2014-08-12       Impact factor: 6.937

3.  Isolation and characterization of microRNAs of human mature erythrocytes.

Authors:  Carolyn Sangokoya; Gregory LaMonte; Jen-Tsan Chi
Journal:  Methods Mol Biol       Date:  2010

4.  A candidate transacting modulator of fetal hemoglobin gene expression in the Arab-Indian haplotype of sickle cell anemia.

Authors:  Vinod Vathipadiekal; John J Farrell; Shuai Wang; Heather L Edward; Heather Shappell; A M Al-Rubaish; Fahad Al-Muhanna; Z Naserullah; A Alsuliman; Hatem Othman Qutub; Irene Simkin; Lindsay A Farrer; Zhihua Jiang; Hong-Yuan Luo; Shengwen Huang; Gustavo Mostoslavsky; George J Murphy; Pradeep K Patra; David H K Chui; Abdulrahman Alsultan; Amein K Al-Ali; Paola Sebastiani; Martin H Steinberg
Journal:  Am J Hematol       Date:  2016-08-22       Impact factor: 10.047

5.  Characterization of an acyl-coenzyme A binding protein predominantly expressed in human primitive progenitor cells.

Authors:  Eric Soupene; Vladimir Serikov; Frans A Kuypers
Journal:  J Lipid Res       Date:  2008-02-11       Impact factor: 5.922

6.  MicroRNA Dysregulation Associated with Red Blood Cell Storage.

Authors:  Xiaojie Chen; Xuhong Xie; Yanfen Xing; Xiuhua Yang; Zhaohu Yuan; Yaming Wei
Journal:  Transfus Med Hemother       Date:  2018-08-24       Impact factor: 3.747

7.  Comparative gene expression profiling of in vitro differentiated megakaryocytes and erythroblasts identifies novel activatory and inhibitory platelet membrane proteins.

Authors:  Iain C Macaulay; Marloes R Tijssen; Daphne C Thijssen-Timmer; Arief Gusnanto; Michael Steward; Philippa Burns; Cordelia F Langford; Peter D Ellis; Frank Dudbridge; Jaap-Jan Zwaginga; Nicholas A Watkins; C Ellen van der Schoot; Willem H Ouwehand
Journal:  Blood       Date:  2006-12-27       Impact factor: 22.113

8.  BloodExpress: a database of gene expression in mouse haematopoiesis.

Authors:  Diego Miranda-Saavedra; Subhajyoti De; Matthew W Trotter; Sarah A Teichmann; Berthold Göttgens
Journal:  Nucleic Acids Res       Date:  2008-11-04       Impact factor: 16.971

9.  The genomic analysis of erythrocyte microRNA expression in sickle cell diseases.

Authors:  Shao-Yin Chen; Yulei Wang; Marilyn J Telen; Jen-Tsan Chi
Journal:  PLoS One       Date:  2008-06-04       Impact factor: 3.240

10.  Selection of urinary sediment miRNAs as specific biomarkers of IgA nephropathy.

Authors:  Zhi-Yu Duan; Guang-Yan Cai; Ru Bu; Yang Lu; Kai Hou; Xiang-Mei Chen
Journal:  Sci Rep       Date:  2016-03-22       Impact factor: 4.379

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